Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00862 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTATTCGATTCCCAGTTCAATGCCCAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGACGGTTATGGAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGACTGGAATTGTGAGGATAAGGGAAGATGGATATGATAGTAGATCAGGCAGTGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGAAGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACGCAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGAGCCGAGAATAGTGTGATGAAGGATGCTATTTCTGACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCAGTCACCAACAAGTTCTTGGGCTGGCCGGTTGTGCCCTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCAGTAGGAAGAAATGGAATTGGAAATTTGAGTACCGTTTCTGATTCAATGGGGCTTAATTTGGGAAACGAACTTTTCAATGCTGGCCCTGTGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGCAGCCATGAATGAATTGGTTAAGATGGCTCAAATGGACGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGACATTTCCTTCTTCGGCTGGCATGAAGCACAGTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTTGTCGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTCGAGCTACTACAATTGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCACTCGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTAATGGTCTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCATTTTTTGGTTGCAGGAGGCTCCCTTCAGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGGTGGAACATACAGAATATGATGAGACTGTTATCCACCAGCTTTACCGGCAGTTAATTAGTTCGGGCAGCGGCTTTGGTTCACAACGGTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATCCCCTCCGAAGATCCTGCAGGAATATCTCCATGCGGTAGGAGAAGTATGTTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGCAGTTCAACTTTGCATAAGTGGGACAAGCTCGTTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAAAGCATCAACGATCCTGGCGAGCCACCTGGTATCGTGTTGAGTGCGGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGTTGTTTGCATTCTTGCAAGATGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGGCCAATGCTAGAGATGCTCCGCATCTCAAAAGGCCAAGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACTTGGACTGATGTATCAGGCTCGCTGGTTGTTTACGCTCCAGTTGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCAATGGTCCATCCAACTATGCTTGCACAAACGACCAAGACGGATCTGTCAAGTCAGTCGTTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACCGCCAAACTCACCGTCGAGTCAGTTGAGACAGTTAACAATCTCATTTCTTGCACCATCCAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2346 44.93 MPSGAITDQSFLAYSIPSSMPSSSEFSSSLRKMDGYGEVCLLGDGFDPTGIVRIREDGYDSRSGSDNIDGAVSGDDQDANEEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISDPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVVPFANHGSSPSSDSCLELSVGRNGIGNLSTVSDSMGLNLGNELFNAGPVMPVSKPEIGMLSNDIPLERTIYVDLALAAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRTFPSSAGMKHSNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIARATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHANGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWVEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPSEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLVVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDVSGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPNGPSNYACTNDQDGSVKSVVNSGHGGGCLLTVAFQILVNSLPTAKLTVESVETVNNLISCTIQKIKTALQIS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8530092 8534632 + ClCG05G007900.1 Cla05g00862 272352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00862 781 CDD START_ArGLABRA2_like 294 512 - -
Cla05g00862 781 SMART START_1 294 514 IPR002913 GO:0008289
Cla05g00862 781 Gene3D - 73 160 - -
Cla05g00862 781 SUPERFAMILY Bet v1-like 542 775 - -
Cla05g00862 781 MobiDBLite consensus disorder prediction 57 94 - -
Cla05g00862 781 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 779 IPR042160 -
Cla05g00862 781 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Cla05g00862 781 Coils Coil 138 170 - -
Cla05g00862 781 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Cla05g00862 781 Pfam START domain 295 513 IPR002913 GO:0008289
Cla05g00862 781 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 37 779 - -
Cla05g00862 781 SUPERFAMILY Bet v1-like 286 514 - -
Cla05g00862 781 SMART HOX_1 86 148 IPR001356 GO:0003677
Cla05g00862 781 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Cla05g00862 781 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289
Cla05g00862 781 CDD homeodomain 87 144 IPR001356 GO:0003677
Cla05g00862 781 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02157 Cla-Chr1:35717070 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla02g00180 Cla-Chr2:1839253 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla03g00460 Cla-Chr3:5175541 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla05g00862 Cla-Chr5:8530092 Cla09g01099 Cla-Chr9:11839186 0 dispersed
Cla07g01251 Cla-Chr7:29523587 Cla05g00862 Cla-Chr5:8530092 1.02E-166 dispersed
Cla05g00193 Cla-Chr5:1738233 Cla05g00862 Cla-Chr5:8530092 0 wgd
Cla05g00862 Cla-Chr5:8530092 Cla06g00005 Cla-Chr6:79777 2.64E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61056 PF01852 START 6.80E-48 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00862 K09338 - csv:101218216 1468.37