Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00864 ATGGTTTTTCATATGGGTATGGAGTTGAAACGCTTCTTTTTCATTTTCATTGTCTGCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGATTTCTTTCAAAGCTTCGTTAGAGACCTCTGAAATTCTGCCATGGAACTCAACAGTTCCTCACTGCTTTTGGGCCGGAGTTTCTTGCCGATTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCACTCAAAGGCCAACTCTCACAGTCCCTTTTTAATATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCTTCTATGGCTCAATCCCACCTCAGGTATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTCGGCGGAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCGGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACTCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAAGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTTCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCGTTTTCGGGTTCAATCCCATCTGAAATTGGTAATCTAAAGCATTTGACTGGGCTTTATATCGGCATTAACCACCTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTTTAACTGGTCCATTGCCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCTATCCCTAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGATGCAGAAATTTGAAAACATTGATGCTTTCTTTCAACTTTCTAACTGGGGAGTTGCCACAAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCTGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTCGATTCTATTTTACTTTCGAGTAATCGGTTCACCGGCGAAATCCCACCTGAGATTGGAAATTGCTTGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATTCCTAAAGAAATTTGTAATGCTGTATCCTTGACAGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACGATTGATGACACATTTGTAATGTGTAAAAACCTTACGCAGTTGGTCTTGGTTGACAACCAGATTGTTGGTTCCATACCAGAGTACTTCTCAGACCTTCCCCTACTGGTAATCAACCTTGACTCCAACAATTTTACAGGTTCTTTACCGACAAGTATATGGAACTCAATGGATTTGATGGAATTTTCTGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGCTGACAGGCATAATACCAAATGAGATTGGTAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGAACTTACCACATTGGACCTTGGAAACAACAGTCTAATTGGGTCGATTCCAGAAAGACTTGCAGACCTTACTGAATTACAGTGCCTAGTTCTTTCACACAACAATTTATCTGGAGAAATACCTTCCAATCCGTCTGCTTATTTTCGACAGTTGACAATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTTGATCTGTCTCATAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTCGTTGTGGTAGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATTCCTAGATCTCTCTCAAAGTTAACAAACCTCACAACCTTGGATTTATCTGGCAATATGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCATGGGAATGATCCCTGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCGGTTCTGAAAACTTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCCTCTTCTCTGTCCAGCATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTTCTTCCACGAACATTGGGCAATCTTTCATACTTGACGACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTTGATGTTTCGAACAACAGGCTTTCAGGGGAGATTCCAGACAAAATATGCAGCCTCATCAATATGTTTTATCTGAATTTAGCAGAAAACAGTCTTGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAAAAGTTCACTTGCCGGTAACAAGGACCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATTGTTCTAACTGTGGCGTTTGCCATGAGAAGACGGATTATTAGAAGACAGAGAGATAATGATCCAGAGGAAATGGAGGAAAGCAAATTAAACAGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCCATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTGGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTCGGGACCGTCTACAAGGCCACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCGAAAACACAGGGGAATAGGGAATTCATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCATTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAACGGTAGCTTGGATCTTTGGCTGAGAAACCGAACTGGTACTCTCGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATACCCCATATCATTCACAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGATTGATCAGTGCTTGTGAGACTCATGTCACGACTGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGCGGTCGACTACCAAAGGCGACGTTTACAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGATTTTAAGGAGATTGAGGGTGGAAATTTGGTTGGCTGGGTGTTTCAGAAGATCAACAAGGGTCAGGCTGCAGATGTTCTGGATGCCACAGTTCTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.4 MVFHMGMELKRFFFIFIVCFELCILSSNGATVQNEIIIERESLISFKASLETSEILPWNSTVPHCFWAGVSCRFGRVTELSLSSLSLKGQLSQSLFNILSLSVLDLSNNFFYGSIPPQVSNLRSLKVLALGGNQFSGDFPIELTELTRLENLKLGTNLFTGKIPPELGNLKQLRTLDLSGNAFVGNVPPHIGNLTKILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPSEIGNLKHLTGLYIGINHLSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNFLTGELPQELSELSMLTFSAERNQLSGPLPSWLGKWDHVDSILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKEICNAVSLTEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGSIPEYFSDLPLLVINLDSNNFTGSLPTSIWNSMDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCSELTTLDLGNNSLIGSIPERLADLTELQCLVLSHNNLSGEIPSNPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPRSLSKLTNLTTLDLSGNMLTGPIPAEIGNALKLQGLYLGNNHLMGMIPESFSHLSSLVKLNLTGNKLSGSVLKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDVSNNRLSGEIPDKICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLAGNKDLCGRILGFNCRIKSLERSAVLNAWSVAGIIIVSVLIVLTVAFAMRRRIIRRQRDNDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGNREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8569756 8573670 + ClCG05G007920.2 Cla05g00864 272354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 216 450 IPR032675 -
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 628 928 IPR032675 -
Cla05g00864 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Cla05g00864 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672|GO:0006468
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 809 897 - -
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 138 347 - -
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 77 140 - -
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 958 1304 - -
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 350 451 - -
Cla05g00864 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 455 790 - -
Cla05g00864 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 38 144 IPR032675 -
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 566 627 IPR032675 -
Cla05g00864 1304 SUPERFAMILY L domain-like 389 620 - -
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 145 215 IPR032675 -
Cla05g00864 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 809 897 - -
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 77 140 - -
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 350 451 - -
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 958 1304 - -
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 455 790 - -
Cla05g00864 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 138 347 - -
Cla05g00864 1304 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Cla05g00864 1304 CDD STKc_IRAK 1032 1301 - -
Cla05g00864 1304 Pfam Protein tyrosine and serine/threonine kinase 1030 1298 IPR001245 GO:0004672|GO:0006468
Cla05g00864 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00864 1304 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Cla05g00864 1304 Pfam Leucine rich repeat 555 614 IPR001611 GO:0005515
Cla05g00864 1304 Pfam Leucine rich repeat 810 868 IPR001611 GO:0005515
Cla05g00864 1304 Pfam Leucine Rich Repeat 760 780 IPR001611 GO:0005515
Cla05g00864 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515
Cla05g00864 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515
Cla05g00864 1304 SMART LRR_sd22_2 170 196 - -
Cla05g00864 1304 SMART LRR_sd22_2 685 717 - -
Cla05g00864 1304 SMART LRR_sd22_2 757 786 - -
Cla05g00864 1304 SMART LRR_sd22_2 458 484 - -
Cla05g00864 1304 SMART LRR_sd22_2 291 317 - -
Cla05g00864 1304 SMART LRR_sd22_2 577 603 - -
Cla05g00864 1304 SMART LRR_sd22_2 855 881 - -
Cla05g00864 1304 SMART LRR_sd22_2 219 245 - -
Cla05g00864 1304 SMART LRR_typ_2 711 732 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 553 577 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 601 624 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 170 193 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 733 756 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 194 218 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 98 122 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 685 709 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 291 315 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 757 781 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 530 552 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 219 243 IPR003591 -
Cla05g00864 1304 SMART LRR_typ_2 831 855 IPR003591 -
Cla05g00864 1304 Coils Coil 1295 1304 - -
Cla05g00864 1304 SUPERFAMILY L domain-like 57 367 - -
Cla05g00864 1304 Gene3D Ribonuclease Inhibitor 451 549 IPR032675 -
Cla05g00864 1304 SUPERFAMILY L domain-like 628 918 - -
Cla05g00864 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Cla05g00864 1304 PRINTS Leucine-rich repeat signature 222 235 - -
Cla05g00864 1304 PRINTS Leucine-rich repeat signature 685 698 - -
Cla05g00864 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01557 Cla-Chr1:30210928 Cla05g00864 Cla-Chr5:8569756 7.08E-67 dispersed
Cla05g00864 Cla-Chr5:8569756 Cla05g00378 Cla-Chr5:3458421 1.07E-87 dispersed
Cla06g01234 Cla-Chr6:25597635 Cla05g00864 Cla-Chr5:8569756 1.84E-10 dispersed
Cla08g00888 Cla-Chr8:21363945 Cla05g00864 Cla-Chr5:8569756 4.62E-73 dispersed
Cla09g01811 Cla-Chr9:35672910 Cla05g00864 Cla-Chr5:8569756 3.96E-06 dispersed
Cla11g00084 Cla-Chr11:1098058 Cla05g00864 Cla-Chr5:8569756 1.63E-42 dispersed
Cla11g00667 Cla-Chr11:7776300 Cla05g00864 Cla-Chr5:8569756 5.94E-11 dispersed
Cla05g00864 Cla-Chr5:8569756 Cla06g00736 Cla-Chr6:9562383 1.25E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80552 PF07714 PK_Tyr_Ser-Thr 9.40E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00864 - - csv:101215443 2372.43