Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00865 ATGTATCTGCAAATTCTTTCAACATACAGGAATTTGCTTCTTCATGTTGGTCTCTCTCTCTCGCTTTCTGTTTTCATCATCTTCTTCAAAATCCCAACCCTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACACCAACAGCGGCGTCCGAGCCGCGATTAGAAGACCTGACGGCTCTAACTCCGGTTCTGGACTAGAGGGGTACCGAAACTTGTCCTCAACTGGTGCCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGACGAAAGCAAGGCGCAGATCTTCAGGTTAAAGCTGGATGAAAATCATCTGCAAACGCGGATCTATTTCAAAGAATACAGAGATGGTTTCACTTTTTCATTTGTGGGTATTTCTTGTTTACTGCTGCAAATTTTCTTGGGTGCATCAAAAAATTCTGGGGTTTGGGGAAATGGGATTTTTGTTCCTCTTCTGTTTGCGATCTTTGCTGGATGCAAGCTGTTTGTATCTCTCACAAAGGTTGCTTTGGAGAAATCTGCGTCCAGGACGTTGGATAGGCAATTGAGTTTGCTCTTTGGAGTTTCTGGGTTTCTTTTTGGGCTTTTAACTTGTTCTGCTTTTAGCCCTCTTATATTGGATTTTGATCTTGGTGAAATTGGTGGTTCGGGGGCTTGTTTCGTTTCTATCTTAATGGCCTGTTGTGCTGGGTTTTTGTTTATACCTGCAACCAAAATCGCTCGATCATTTTGGCTTGGAACTGATCAAATTAGATGCAATTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGGTTTTGTATTCAAGTCAGGTAGTCATGGCTTTCACCACCTTGCTTTGGGTTAACCCATTAGCTGAAATTTTCATTAACAAGAACATCGGCGAAGGTACAATTGACCGTATGTCTAGTGAAATCCGAAATGCTGACAGATTGGTCGGAAGTATAGGATTCTCAAAGGCAGATTTCATCAAGCTTAGGCTCTGGTGTTTGTCACTGTCGGGTTTCTTGCAAATCATCGCAGTAAGGCAAAACTTGCAAATGTATCTGAACGAAGCTTTGTTATCTTGGTATCAAAGATTGCATGCTGGGAAAGTTCCTGACTTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGTCTGCTTTGCAGTTCTTTGCTCCACCAGCCTTAGTTTTTCTTTTTGTTGGGTTATCGCAAATTGGTATTAACTCTTTGGAAAATACCAATTTGGTAAGTTTTCTTCTTCCCTGTTCTTCTTTTGTCCAACAAGTGGCTCTGTTAATGGCTTGGTGGATTGTCTCTGTAATGACTATTTATACATCAGCCACCATTGTGCTATATCGTTGTGGCACATTGTATCATCTTCCCTTCCCATCACTTGGAAGCAAAAAAATCTTGTCTTCCTCCTTCTTCCACGAACCTTCTAGAATTGAAATTCCAGTGCCGTACCTGGAAAATTCTCCCAACTATTCCTCTAAAATTCTCATACCGAAGCTTTCCTTAGGGTTTGGGAGTTGCGACCGATCATTCGGGGATCTGATTTCGTTGATTCTTGGGGTTCCTCTCATGGAGGACCCGACCGCCAAGCAGAAGCCTACTGCAGGCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACGAAAACTTATCAGCTCGTTGACGACGAGACAATTGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTCTGGAACACCATGGCTTTCGCCAGGGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCACCAGCTTTCTCCGTCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGATCGTTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTCGGAAATTGGCCGCTCCGGTGCCGTCCACTGCGACGATTCCGTCTGCGCAACTATTAACATTGACGGGGAATTCTTCCGGTGAAGAACAAGTGATTTCGTCCGATGAGACTCCGACGACAGCTCTTGCAGAGCTGATCGATGAGAACGATCGGCTGAGAAAAGAGAAAGTTCAGCTTACGGAACAATTGGTTGAGGTGAAATCTCTGTGCAACAATATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAGTTTAAGAGCAGTTTTAAAGTGAGAGAGAGCGTTTTAACATCCGCAAAATCGCTCGATCTTTTCCCGGTGAAGCGGGCTTCCGGTGAAGACGAAACGGCGGAGGCCGAGGAGGAGGAGACGAATCAGATCGGCGCGAAGCGACCGAGGGAATATAGGGAAGTGGCGACGGAGACGGCGGAGGATGATACTGCTTTGCGGCTTCAACCACCGGATAGATCGGAAGTCTTATCAGAGCGGATAAATTGTCAAAAAAAAGTTGATCAGAAAACGTGGCATAATCAGGAGAGAGAAAACATGACTTAA 2490 44.26 MYLQILSTYRNLLLHVGLSLSLSVFIIFFKIPTLFLHGIFTYIHPDNTNSGVRAAIRRPDGSNSGSGLEGYRNLSSTGAAEIRKRTKSKDKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKNSGVWGNGIFVPLLFAIFAGCKLFVSLTKVALEKSASRTLDRQLSLLFGVSGFLFGLLTCSAFSPLILDFDLGEIGGSGACFVSILMACCAGFLFIPATKIARSFWLGTDQIRCNLDMVYCGWFSRMVLYSSQVVMAFTTLLWVNPLAEIFINKNIGEGTIDRMSSEIRNADRLVGSIGFSKADFIKLRLWCLSLSGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVSALQFFAPPALVFLFVGLSQIGINSLENTNLVSFLLPCSSFVQQVALLMAWWIVSVMTIYTSATIVLYRCGTLYHLPFPSLGSKKILSSSFFHEPSRIEIPVPYLENSPNYSSKILIPKLSLGFGSCDRSFGDLISLILGVPLMEDPTAKQKPTAGDSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLAAPVPSTATIPSAQLLTLTGNSSGEEQVISSDETPTTALAELIDENDRLRKEKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLTSAKSLDLFPVKRASGEDETAEAEEEETNQIGAKRPREYREVATETAEDDTALRLQPPDRSEVLSERINCQKKVDQKTWHNQERENMT 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8574780 8580558 - ClCG05G007930.1 Cla05g00865 272355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00865 829 SMART hsfneu3 553 646 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 Pfam Predicted transmembrane protein 161AB 226 407 IPR019395 -
Cla05g00865 829 ProSitePatterns HSF-type DNA-binding domain signature. 596 620 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 PANTHER RE42071P 8 466 - -
Cla05g00865 829 Pfam HSF-type DNA-binding 557 646 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 PANTHER RE42071P 8 466 IPR019395 -
Cla05g00865 829 Coils Coil 687 714 - -
Cla05g00865 829 MobiDBLite consensus disorder prediction 768 792 - -
Cla05g00865 829 PRINTS Heat shock factor (HSF) domain signature 557 580 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 PRINTS Heat shock factor (HSF) domain signature 595 607 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 PRINTS Heat shock factor (HSF) domain signature 608 620 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cla05g00865 829 SUPERFAMILY Winged helix DNA-binding domain 554 646 IPR036390 -
Cla05g00865 829 MobiDBLite consensus disorder prediction 756 792 - -
Cla05g00865 829 Gene3D - 549 647 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00865 - - - csv:101217739 832.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00865 Cla-Chr5:8574780 Cla05g02052 Cla-Chr5:32219334 1.14E-51 dispersed
Cla01g02245 Cla-Chr1:36395815 Cla05g00865 Cla-Chr5:8574780 1.18E-33 transposed
Cla04g00354 Cla-Chr4:13106019 Cla05g00865 Cla-Chr5:8574780 9.37E-48 transposed
Cla01g00293 Cla-Chr1:3074578 Cla05g00865 Cla-Chr5:8574780 1.55E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61057 PF10268 Tmemb_161AB 2.30E-12 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00865 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cla05g00865 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0