Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00871 ATGGGGAAACAGAAACAACAAGTGATTTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCATCTCTTTCTTCTTCTTCCTCCGCCGCCGCCTTAACTTCGCCGACCCAACCTTTTTCACCTCCTAAGATATCAGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCACTCGCCTCTCAATCAACACCACCCAAATCCTCTAAACGCCCAAAACTCTCTCCTCATACCCAAAACCCTCTGCCTTCCGTTCCCAATGCCTCACTTCATAAAAGATTCCTCCACAAGTTCCTTGAACCCACGGATGACTCTTTCGAACCTTCTAATCAAAACCCCAGAATCTCAACGGTCGCTGATGTCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTATAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTTAAGCAAACCGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGTAGGGGATTATCGGCTTTGTATACTAAATCAACATTGGAGGCGGCCCAGAATTTTGGGGGAGCTGAAGAGGGATGTGGTGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAAAATAGTATGTTGGTGGATAATTTGGACTTTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTTATGAGAAGTGGGCTTGAGGCAATGTTCTTGAGCTTGTCTCCTGCTGAGTTACTTCTTGGGGATCCCATATCAAAGCCAACAGAGAAGACAACACCCCAATTACAGCTCATCGACGCAAGCAGTGTTCTTCAAACAACGGGGAATAGCATTATATGTGTGGATGAAGGCAGTGGATATTTTCCAGGAAAATATTGGGTGTGTGGTTGCCTTAGCCCTAATCAGAGATTGCTTGGATGCTATTTTGAGGAGGACTTTTCCAAGGAGAGGAGAGTGATTCAGGAGCCGGGGATCATTGTAGGCATAGTTGTAGGCTTTCCTCCACTTGGTTGGTCCACATGCGCCCGCCCATTTGGTTTTGTATGGGATGCCTTTCAAGAGATGGACTCAAAACTGAATAAGCTTGGAAATGTGCTCTCAAGCTTGATTCTATGGAGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTATATGAAAACATTGACAAAGATAACTTAGCCGAACATAACAACCCTGAAACGGTGTTGGTTGGACAAAAAAGTGATCGCACAGCAATTAAGGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTAACCATTCGTCACTTGAAGCAGTTTGGTTTAGAAAGGATTGTGTCTTTGGGATCTTCTTTTAGGCCATTCTCATGCCAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTCGAGGTTTTGAAGAATAATGATGACGGTTCACAAACTGGATCTTTATTACAGTGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCTGTTTCCGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCAAAATAACAGAGTGTTGGATGAAGAAGATTCTGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCGGTGTTGACATGCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATCAGAGGTACTGAGAGTTATTATCTTTGTAGTGTTAGGAGTTGATAGTTCTTATATTTCAGTCTCTGGCCTGAGTTTTCTATTTGCCATAACTGCACTGTTCATTGCAGTTATTCAAGCTATTCTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTCATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTCAGAAAGCTGATTTTATCTGCTTCTTCCTCCAGTTTAATAAACATTGCTGCAAAGCTTTTGTCAATGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCTAACCTAATGATCATCTATGGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCTTATACCGCAAGCACCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACACATTTGATTGAGTTAGCCTTAGATGTAAAGGTGCCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCGTAAGGTATCACCCACCTGAAATATTGGCTGCGTTAGACGAGCTATCGCTGGCAAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATGGCTTTCTAAGTGGATTCAGTGGATATTATGCAGAGTTCCAAGCTGCTGTTCAAGCATTGGCTTCCATCGATTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGGTAACATTTCATAACTATGCTCGCCCAGAGTTTGTGCATGATGATGAACCTGCTCAGATACTTATATGCTCCGGACGCCATCCGGTTTTGGAAGGTACATTCCAAGGCAATTTTGTCCCAAACGACACAAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGGGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTAAATCAAACTGTTCCACTTTTATTTGCAACTGTTGGTTCCTTTGTACCGGCACTCTCTGCCAAACTTCATGTCCTGGATGGCATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACTTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCGCGTTCCTTGGTCATAATTGACGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTTTGCATAATCTTCTCCAGCAGAAGAAATGTTTGGTCCTTTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGCAAAGGAGTTCCCAGCATCTGTGGGGGTATACCATGTTTCATATCTTACTTCACACAAAAATCCAAGCTTGTCGGGCCCAAAATCGACTGAGGAGGATGTGACTTACCTATATAAACTTGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTATCATGTATTGCACGGGCCACAGAGATGGGGGTCTGGTTAGAAGAAATAGTAACAAGAAGAGCACAGCGTAAATCCACAGAACAGCATTCGCAAGAAGCATCAGCCAGGGGGTGGGAATGGGAAAGCTCCCAGTGCTTCCTCGAAGATGTTGATGCGTCAGAAGAAAGAATTGATGATTACGAGAAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTACTGATGACATGGGAAAAAGGTGCCATCAAATTTACCAAGCGAGAAGCATGGCCATGGACTTGTTAGGAAGGTAA 3813 43.17 MGKQKQQVISRFFAPKPKSPSLSSSSSAAALTSPTQPFSPPKISATVTFSPSKRLISSALASQSTPPKSSKRPKLSPHTQNPLPSVPNASLHKRFLHKFLEPTDDSFEPSNQNPRISTVADVKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKSTLEAAQNFGGAEEGCGGESNYLFCVVENSMLVDNLDFRIENGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMFLSLSPAELLLGDPISKPTEKTTPQLQLIDASSVLQTTGNSIICVDEGSGYFPGKYWVCGCLSPNQRLLGCYFEEDFSKERRVIQEPGIIVGIVVGFPPLGWSTCARPFGFVWDAFQEMDSKLNKLGNVLSSLILWSYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENIDKDNLAEHNNPETVLVGQKSDRTAIKEIVNMPNLALQALALTIRHLKQFGLERIVSLGSSFRPFSCQMEMTLSGNTLTQLEVLKNNDDGSQTGSLLQCMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMVSSKVSQNNRVLDEEDSDVMVIEPELNYILSSVLTCLGRAPDIQRGITRIFHRTAAPSEVLRVIIFVVLGVDSSYISVSGLSFLFAITALFIAVIQAILFAGKQLQQFHIHEEDDNYSSESMIGSKLLRKLILSASSSSLINIAAKLLSMISKEAADQGDFPNLMIIYGDQFPKVARARKEAQSAREKLDSLITLYRKHLGMRKLEFTSVSGTTHLIELALDVKVPSNWVKVNSTKKTVRYHPPEILAALDELSLANEELMVASRDAWDGFLSGFSGYYAEFQAAVQALASIDCLYSLAILSRNKVTFHNYARPEFVHDDEPAQILICSGRHPVLEGTFQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVNQTVPLLFATVGSFVPALSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASVGVYHVSYLTSHKNPSLSGPKSTEEDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHSQEASARGWEWESSQCFLEDVDASEERIDDYEKFFLFLKATICSTDDMGKRCHQIYQARSMAMDLLGR 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8617823 8625431 - ClCG05G007980.2 Cla05g00871 272361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00871 1270 Coils Coil 793 813 - -
Cla05g00871 1270 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 99 336 - -
Cla05g00871 1270 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 99 336 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cla05g00871 1270 SMART DNAend 569 956 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 SMART mutATP5 973 1184 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1065 1081 IPR000432 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 442 1262 - -
Cla05g00871 1270 SUPERFAMILY DNA repair protein MutS, domain I 118 233 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 MobiDBLite consensus disorder prediction 1 88 - -
Cla05g00871 1270 SUPERFAMILY DNA repair protein MutS, domain III 554 921 IPR036187 -
Cla05g00871 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 929 1183 IPR027417 -
Cla05g00871 1270 Gene3D MutS, connector domain 248 349 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 Gene3D MutS, connector domain 427 548 IPR036678 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 Gene3D DNA repair protein MutS, domain I 116 242 IPR016151 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 442 1262 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Cla05g00871 1270 Pfam MutS domain III 554 917 IPR007696 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 Gene3D - 767 893 - -
Cla05g00871 1270 Gene3D - 551 917 - -
Cla05g00871 1270 MobiDBLite consensus disorder prediction 17 87 - -
Cla05g00871 1270 Pfam MutS domain I 125 235 IPR007695 GO:0005524|GO:0006298|GO:0030983
Cla05g00871 1270 Gene3D - 929 1222 IPR027417 -
Cla05g00871 1270 PIRSF Msh6 452 1233 IPR017261 GO:0006298|GO:0030983
Cla05g00871 1270 PIRSF Msh6 113 349 IPR017261 GO:0006298|GO:0030983
Cla05g00871 1270 Pfam MutS domain V 976 1182 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00871 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 1302.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00411 Cla05g00871 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00871 Cla-Chr5:8617823 Cla06g01486 Cla-Chr6:28409307 3.40E-49 dispersed
Cla09g00474 Cla-Chr9:4525416 Cla05g00871 Cla-Chr5:8617823 2.14E-07 transposed
Cla10g00461 Cla-Chr10:6092606 Cla05g00871 Cla-Chr5:8617823 6.89E-11 transposed
Cla11g00228 Cla-Chr11:2617430 Cla05g00871 Cla-Chr5:8617823 3.74E-07 transposed
Cla01g00411 Cla-Chr1:4509957 Cla05g00871 Cla-Chr5:8617823 7.90E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00871 Cla_Chr05 FPKM 10.846715 10.774213 12.023711 10.385879 16.017704 20.086691 18.448412 12.959105 10.941602 11.581203