Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00877 ATGGTGAAGCTGACAATGGTTGGAAGAGTTAGAGATGGATTGCCAATTGCACAAGGTATTAGATATGTTAATGAAGAGAATGATGATATTTTGGGCTACAAAAAGCAAGCTGAATTCATACTCAAAGAGATCTCTAGAGGAACTATATCACCTTCAAAAATGGCCATTCTAATGCATCATCACTGTTTCATTTACTTGGTGGAGAATGGTGTATGCTATATGACATTGTGCGATTCTTCGTACCCAAGAAAGCTGGCTCTCCATTACTTGCAAGATTTGCAAAAAGAGTTTGGGAAGTTTGATGATGCCCTAATAAATAACCTTATGAAACCCTATAGTTTTATCAAATTTGATAGTATTATTAGCAATGTTAGGAAACAATACATTGATACAAGAACACAGGCCAATCTATGCAAGCTCAATGCAAATCGTCGTCAACCTGATCTAGACATGCTCACTTGTTCGCTTTCTGAGATTCTAGAGAGAAGGAGAAAACTAGATATGGTGGAAAGATCAATGTGTAATACGAATTCTCAAGGTGCATCCTCCTCCATTTGGGGGTCTCCCTGTCTTGAGGAAATTGTTCTGAAATGGACGCCAATGGTTGTAACTTTTGCCGTAGTGCTTATCACTCTATGGGCTTTTTTTCTTCTCTTCGACATCTCATTATCTCATCATAATGAATTTGTAATTCTTTATAACAACAGAAAATTGTTTCACTAA 723 36.93 MVKLTMVGRVRDGLPIAQGIRYVNEENDDILGYKKQAEFILKEISRGTISPSKMAILMHHHCFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEFGKFDDALINNLMKPYSFIKFDSIISNVRKQYIDTRTQANLCKLNANRRQPDLDMLTCSLSEILERRRKLDMVERSMCNTNSQGASSSIWGSPCLEEIVLKWTPMVVTFAVVLITLWAFFLLFDISLSHHNEFVILYNNRKLFH 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8656727 8660552 - ClCG05G008020.2 Cla05g00877 272367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00877 240 Pfam Regulated-SNARE-like domain 37 119 IPR010908 -
Cla05g00877 240 SMART Longin_2 40 120 IPR010908 -
Cla05g00877 240 CDD Longin 5 128 IPR010908 -
Cla05g00877 240 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 220 - -
Cla05g00877 240 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Cla05g00877 240 ProSiteProfiles Longin domain profile. 6 121 IPR010908 -
Cla05g00877 240 Gene3D Longin domain 1 129 - -
Cla05g00877 240 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 220 IPR044565 GO:0005484|GO:0006888|GO:0006890
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00877 K08517 SEC22; vesicle transport protein SEC22 - csv:101213515 426.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00877 Cla-Chr5:8656727 Cla07g01370 Cla-Chr7:30835087 3.97E-41 dispersed
Cla05g00877 Cla-Chr5:8656727 Cla09g00106 Cla-Chr9:1085301 1.43E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g659 . . . . . . . . . Cmo18g01267 . . . . Sed13g0120 . . Bhi01g01324 Tan01g0257 Cmetu06g1462 . Hepe07g0162 Mch10g0159 . . . . . . . . . . . . . . . Cme06g00993 . . . . . . . . . . . . Cma18g01244 . Car18g01150 . . . . . . . . . Cla05g00877 Cam05g0965 . Cco05g0969 Clacu05g0953 Cmu05g0909 Cre05g0993 . Csa03g01707 Chy06g00943 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013964 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00877 Cla_Chr05 FPKM 0.0 2.562857 0.0 0.0 0.0 0.0 0.0 1.630481 0.0 0.0