Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00883 ATGCTCTTTTTAAGCTTTCCAAAAATGAATTATTCTACATTTGGCTTCATCCTAGCCCTTCTCGTGGCTCTCTCTTTCCAAACAACACTGGGGGAATCAAGAAGAATAGGCAGCAACATGATAAAGTGCGAGGATTTAGAGAAAAGCAAGTGCGCGTTTGCGGTGTCATGGTCGGGAAAAAGGTGTGTGCTTGAAAAAACAGTGAAGCGCAGCGGAGAAGAAGCATTCACATGTCGGACGTCGGAGATCGAAGCCGACCGATTACAGAACATCGTCGAAACAGAGGAGTGCGTCGAAGGTTGTGGCCTCGACAGGAACACTCTCGGCATCTCCTCCGACTCCCTTCTCGACACTCGCTTCACACGCAACCTTTGTTCCTCTCGCTGTTATAACCATTGTGCCAATGTTGTCGATCTCTTCTTCAACCTGGCTGCCGGTGAAGGTGTTTTTCTTCCAAAGCTATGTGAAGTTGAAGGAGGAAATGTGAGAAGGGGAATGTCGGAGATTAGAAGCTCTGGGATTGTTGCACCCGGACCCATTCAACCAGTGTCTCTGTCGATTGCACCGGCAGTTGCGCCGGGGCCGATTCAGGCCATCTCTTTATCGGTGAAGATGGTGAGCCAAAGGCAAAGACTTGCTCGGAAAAAGTACAGAGAAGAACACCCAGAACTGTTCCCGATAGCAGAGCCAACCCCACCAAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGAAGAATCGAACTCAACCAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAACCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGATCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGCCTCAAGAATTGCCCAGACAAAAATGAAGGAACTGTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCAGAACCCCTTCAAGATGGGGGAACTAAGTTCGCCAGTTGTTTTATTTGTAATGAAAGCGGACACTTAAGCAAGAATTGTCCGAAGAATACTCATGGGATCTATCCTAAGGGTGGTTGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGGCAACCAAGTGTTTGATAGGGCTGGTGTATCTGGTTATAGAACATCTGGATATGTGGAAATGCCGAGACGACAAGTGACGAAACTCGTCAGTGGTGATGATCTCGAGGATGACTTCATGATCAATGAAGATCATTTGCAAATCAAAGATGCAAAAATGGGAAAGAAAAAGGGTCCTAAAGTTGCGAACTCTGCATCTGGAATGGCTGTGAGAGATGAATGCAAACTGAAATTTTTGGAGTTAAAAGCCAAGAGAAACTATCGATTCATTATATTCAAGATTGAGAACCAAGAAGTTGTCGTGGAGAAACTTGGAAGCCCTGAAGAGACTTATGATGATTTCACTGCTGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGACTTTGATTTCACTACTGATGAGAATTGCCAGAAAAGCAAGATTTTCTTCATAGCATGGTAA 1662 44.71 MLFLSFPKMNYSTFGFILALLVALSFQTTLGESRRIGSNMIKCEDLEKSKCAFAVSWSGKRCVLEKTVKRSGEEAFTCRTSEIEADRLQNIVETEECVEGCGLDRNTLGISSDSLLDTRFTRNLCSSRCYNHCANVVDLFFNLAAGEGVFLPKLCEVEGGNVRRGMSEIRSSGIVAPGPIQPVSLSIAPAVAPGPIQAISLSVKMVSQRQRLARKKYREEHPELFPIAEPTPPKDPDKKKKKKKSKFKRKKEESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTVDKKLCYNCGETGHSLANCPEPLQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGCCKTCGEVTHLAKDCPNKGNQVFDRAGVSGYRTSGYVEMPRRQVTKLVSGDDLEDDFMINEDHLQIKDAKMGKKKGPKVANSASGMAVRDECKLKFLELKAKRNYRFIIFKIENQEVVVEKLGSPEETYDDFTAAIPANECRYAVFDFDFTTDENCQKSKIFFIAW 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8687401 8696936 - ClCG05G008060.2 Cla05g00883 272373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00883 553 CDD ADF_cofilin_like 471 553 IPR017904 GO:0015629|GO:0030042
Cla05g00883 553 SMART adf_2 477 553 IPR002108 GO:0003779
Cla05g00883 553 Pfam Zinc knuckle 334 350 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 Pfam Zinc knuckle 362 377 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 Gene3D - 279 329 - -
Cla05g00883 553 SUPERFAMILY Retrovirus zinc finger-like domains 277 326 IPR036875 GO:0003676|GO:0008270
Cla05g00883 553 SMART c2hcfinal6 308 324 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 SMART c2hcfinal6 283 299 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 SMART c2hcfinal6 334 350 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 SMART c2hcfinal6 388 404 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 MobiDBLite consensus disorder prediction 213 273 - -
Cla05g00883 553 PANTHER OS04G0555800 PROTEIN 205 468 - -
Cla05g00883 553 SUPERFAMILY Actin depolymerizing proteins 466 553 - -
Cla05g00883 553 Pfam PAR1 protein 41 193 IPR009489 -
Cla05g00883 553 ProSiteProfiles Zinc finger CCHC-type profile. 389 404 IPR001878 GO:0003676|GO:0008270
Cla05g00883 553 ProSiteProfiles ADF-H domain profile. 470 553 IPR002108 GO:0003779
Cla05g00883 553 Pfam Cofilin/tropomyosin-type actin-binding protein 479 553 IPR002108 GO:0003779
Cla05g00883 553 Gene3D Severin 465 553 IPR029006 -
Cla05g00883 553 Gene3D - 330 356 - -
Cla05g00883 553 SUPERFAMILY Retrovirus zinc finger-like domains 328 378 IPR036875 GO:0003676|GO:0008270
Cla05g00883 553 Gene3D - 357 414 - -
Cla05g00883 553 ProSiteProfiles Zinc finger CCHC-type profile. 335 350 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00883 - - - cmo:103484078 613.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00433 Cla05g00883 CCT
Cla01g00433 Cla05g00883 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00883 Cla-Chr5:8687401 Cla10g01992 Cla-Chr10:35751784 7.63E-42 dispersed
Cla02g00487 Cla-Chr2:4780794 Cla05g00883 Cla-Chr5:8687401 2.99E-06 transposed
Cla06g01405 Cla-Chr6:27597993 Cla05g00883 Cla-Chr5:8687401 4.30E-06 transposed
Cla10g00074 Cla-Chr10:757573 Cla05g00883 Cla-Chr5:8687401 1.93E-09 transposed
Cla10g02056 Cla-Chr10:36288046 Cla05g00883 Cla-Chr5:8687401 1.65E-48 transposed
Cla01g00433 Cla-Chr1:4688960 Cla05g00883 Cla-Chr5:8687401 2.46E-51 wgd
Cla05g00177 Cla-Chr5:1606693 Cla05g00883 Cla-Chr5:8687401 1.71E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003494 2 2 2 3 2 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 2 1 1 1 1 2 1 3 1 3 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00883 Cla_Chr05 FPKM 0.0 0.0 0.079412 0.0 0.0 0.0 0.0 0.0 0.0 0.0