Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00886 ATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACTGCACACTTCGGAAATCTCGTCGCTAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTCCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCACAGTCAAGTAAAAGTGCAGGCAAGTTTGTTACCTGCATTGTTTCTGCATTTATAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAATCAGCACGCCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGATGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTGTTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATTGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAATTTACGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGATGAATACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCCTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAGCCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAA 1605 41.99 MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGKSEHYSQISGQKRKHDDLETVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8713268 8720307 + ClCG05G008100.1 Cla05g00886 272376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00886 534 Gene3D - 3 76 IPR036388 -
Cla05g00886 534 PANTHER RNA POLYMERASE III DNA DIRECTED -RELATED 3 534 IPR039748 GO:0003697|GO:0005666
Cla05g00886 534 Gene3D - 277 372 IPR036388 -
Cla05g00886 534 Gene3D - 91 188 IPR036388 -
Cla05g00886 534 Pfam RNA polymerase III subunit RPC82 helix-turn-helix domain 10 69 IPR013197 -
Cla05g00886 534 Pfam RNA polymerase III subunit RPC82 168 350 IPR008806 GO:0003677|GO:0006351
Cla05g00886 534 MobiDBLite consensus disorder prediction 183 207 - -
Cla05g00886 534 Gene3D - 373 458 IPR036388 -
Cla05g00886 534 MobiDBLite consensus disorder prediction 237 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00886 K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3 - csv:101211588 916.376
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g694 . . . Bda07g01875 . . . . . Cmo18g01272 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0081 . Lsi05g01220 . . Cme06g01005 . . . . . . . . . . . . Cma18g01249 . Car18g01156 Cpe09g00088 . . . . . . . . Cla05g00886 Cam05g0973 Cec05g0977 Cco05g0976 Clacu05g0960 Cmu05g0917 Cre05g1001 . Csa03g01718 Chy06g00950 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004329 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00886 Cla_Chr05 FPKM 0.730929 1.110906 1.018532 2.328526 1.864364 1.735052 3.340806 1.125146 2.114944 1.493049