Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00887 ATGGAGTTGATTTGTGTGTTGATTATGTTAATCATGTGGGTGATTAGGGTTTCAATCATGGTTTTGTTTGGGAAAGTTGTGGTTTCATGGTGGATTTTGCCTATTTTGGCTCATAAAAATTTGAAGAGAAATGGATTTGAAGGTCCTTCTCCTACTTTCCCTCTTGGAAATATTACAGAGATGAAGAAGATAATGAAAGCTGCTGCAGCCATTAGTGGATCATCATCTACCTCCTTTGCTTCTTCAAATAATTTCTCCCATGATATTCATTCAACTATTTTCCCTCACTTTGCTCAATGGCAGAATTCTTATGGGAAGAAGTTTGTATATTGGTTGGGGACAGAGCCATTTTTGTACATAGCAGACCCACAGCTTGTGAAGAAGATATCTGAAGCTGTGATGGGGAAGAATTGGGGGAAGCCAGCTGTCTTCAGAAACGACCGAGAACCGATGTTCGGCGATGGCCTCGTCATGACCGAAGGTGACGACTGGATTCGCCATCGCCATATCCTCACTCCCGCCTTCAACCCCGCCAATTTGAAGGCAATGACAAAGTTCATGGTGGAGTCCACCACTAAAATGGTAAAAGAGTGGAGAAGCCTCGTAAACTCCGGGCAACCGGAAATCGACGTGGAAAGAGAAATTACGGCAACCGCCGGCGACATAATCGCAAAGGCAAGCTTCGGAATGTCGAGTGGCGGCGGGGGGGAAGAGGCGTTGAACAACCTGAGAGCTCTTCAGTTAACTCTGTTCTCCAACAGCAGCTACGTTGGGGTCCCATTCAGCAGTGTATTTCTGTACCCTGCCCGAACCCTAGCCGCCAAGAAACTGGGTGCCCAAATCGACCGCCTCTTCTTTTCCATCATATCTCACAGGAAACTCTCCCCCGATTCCGATTCCGATTTGCTGACTCGGTTGATTCAGAGTCAAAGCAACCAGAGGGTGGCCCTGACCCCGAGAGAAGTGGTGGACGAGTGTAAGACATTCTTCTTCGGCGGCCATGAGACGACGGCGCTGGCCATCAGTTGGACGCTGCTGCTGTTGGCCACTCGCCCGGAATGGCAAAACATTTTACGAGAGGAGATTAAAGAAGTGGTCGGAGATAAAGATATTGATTTCTCCATGCTTTCTTCACTCAAAAAGATGGGATGGGTGTGGAATGAGGTACTTAGGCTATACCCCTCAGCCCCAAACATACAAAGACAAGCAAAAGGAGACATTGATTTAGGGGACATGAAGATCCCAAAAGGGACCAACATATGGATAGACATCGTCGCAATGCATCACGACTCGACCCTATGGGGCAACGACGTTAACGAGTTCAAGCCAGAGAGGTTCCAACAAGACACCATTCATGGCGGGTGCAACCACAAGATGGGATATTTGCCTTTTGGTTTTGGAGGGAGAATGTGCATTGGTAGAAACTTATCTTCTATGGAGTATAAGATTGTCCTAACCCTAATTCTTTCTACATTTTCGCTCTCTCTTTCTCCTTCTTACTCTCATTCTCCTGCTAATTTGCTCTCTCTGAGACCTGCCCATGGCATTCCTCTCATTCTAAGCCCGCTTTATCCTTAA 1578 46.83 MELICVLIMLIMWVIRVSIMVLFGKVVVSWWILPILAHKNLKRNGFEGPSPTFPLGNITEMKKIMKAAAAISGSSSTSFASSNNFSHDIHSTIFPHFAQWQNSYGKKFVYWLGTEPFLYIADPQLVKKISEAVMGKNWGKPAVFRNDREPMFGDGLVMTEGDDWIRHRHILTPAFNPANLKAMTKFMVESTTKMVKEWRSLVNSGQPEIDVEREITATAGDIIAKASFGMSSGGGGEEALNNLRALQLTLFSNSSYVGVPFSSVFLYPARTLAAKKLGAQIDRLFFSIISHRKLSPDSDSDLLTRLIQSQSNQRVALTPREVVDECKTFFFGGHETTALAISWTLLLLATRPEWQNILREEIKEVVGDKDIDFSMLSSLKKMGWVWNEVLRLYPSAPNIQRQAKGDIDLGDMKIPKGTNIWIDIVAMHHDSTLWGNDVNEFKPERFQQDTIHGGCNHKMGYLPFGFGGRMCIGRNLSSMEYKIVLTLILSTFSLSLSPSYSHSPANLLSLRPAHGIPLILSPLYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8738876 8742300 + ClCG05G008110.1 Cla05g00887 272377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00887 525 PRINTS P450 superfamily signature 471 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS P450 superfamily signature 462 471 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS P450 superfamily signature 384 395 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS P450 superfamily signature 332 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 464 473 IPR017972 GO:0005506|GO:0016705
Cla05g00887 525 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 14 519 - -
Cla05g00887 525 PANTHER CYTOCHROME P450 FAMILY MEMBER 14 519 - -
Cla05g00887 525 SUPERFAMILY Cytochrome P450 90 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 Pfam Cytochrome P450 92 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 Gene3D Cytochrome P450 81 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS E-class P450 group I signature 341 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS E-class P450 group I signature 321 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS E-class P450 group I signature 471 494 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS E-class P450 group I signature 461 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cla05g00887 525 PRINTS E-class P450 group I signature 101 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00435 Cla05g00887 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00887 Cla-Chr5:8738876 Cla05g01247 Cla-Chr5:14366775 5.32E-112 dispersed
Cla01g00435 Cla-Chr1:4707730 Cla05g00887 Cla-Chr5:8738876 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00887 - - csv:101220942 868.996