Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00888 ATGAGTCCGCCCGCCGTCGAATCTCCCTTACTTCTTCTTTTCCTGCTTGCTGCAGCGCTGCGGTGCCCTCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCGAAACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGAGCGGGAAACTGGCTTTTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGTCGAAGAGGATCAACGCGTTTAATGACCAAATGGGAAGACTTCTCTGGCATTCTTAGCAACAATGCTTCTCTTAATCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCTGGAGATGCCTTGTTTGACAATGGGATATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGCTCTGCTGGAGGTTTAGCAACTTTTCTTCATTGTGAAAATTTCACCAAGTATTTGCCAAGGAATGCTAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATTGGTCTAAACCACACAATGAGGAACTTTTATTGGGATCTTGTGGCTCTTCAGGGGATGGAGCAAAATTTGAATGAAAACTGCACAGCCTCCTCTTACTTTCCAGAATTGTGCATATTCCCTCAGTATTCATTGAAGTACATAACAACACCATTTTTCATTCTGAATTCAGCATATGATGTTTACCAATTTCATCATGGGTTGGTGCCACCATCTGCTGATTTACATGGACATTGGAACCATTGCAAATTTAATCCAGCAGAGTGTAGTGAACTACAGATTCAGGCATTGCAAGGTCTAAGAATGAGTATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCTGACGACTCCCCAACAATAGACAACAAGACTATAGCAGAAGCAGTTGGAGATTGGTATTTTAGCAGGAGAAACACAAAGGAAATTGATTGTGCATATCCATGTGACTCTACTTGCCATAATATTATACCATAA 1194 43.72 MSPPAVESPLLLLFLLAAALRCPLAGARLLVEMTVVRNASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGISLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYWDLVALQGMEQNLNENCTASSYFPELCIFPQYSLKYITTPFFILNSAYDVYQFHHGLVPPSADLHGHWNHCKFNPAECSELQIQALQGLRMSMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFADDSPTIDNKTIAEAVGDWYFSRRNTKEIDCAYPCDSTCHNIIP 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8744604 8763504 - ClCG05G008120.2 Cla05g00888 272378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00888 397 Pfam Pectinacetylesterase 28 377 IPR004963 GO:0016787
Cla05g00888 397 PANTHER PECTIN ACETYLESTERASE 9 27 397 - -
Cla05g00888 397 PANTHER NOTUM-RELATED 27 397 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01719 Cla-Chr3:33156144 Cla05g00888 Cla-Chr5:8744604 1.27E-135 dispersed
Cla04g00807 Cla-Chr4:23123349 Cla05g00888 Cla-Chr5:8744604 8.55E-61 dispersed
Cla05g00888 Cla-Chr5:8744604 Cla07g01062 Cla-Chr7:27204098 1.15E-115 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00888 K19882 - csv:101216160 769.615