Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00890 ATGGGAACCTCTGTTCAGGTGACACCTCTTTGCGGGGTGTTCAATGAAAACCCTTTATCGTATTTGGTCTCTGTTGACGGTTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGTGCTCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTATTCCACTGAACCCGTTTACCGATTGGGTCTTCTTACAATGTATGATCAGTTTATCGCGAGGAAGCAAGTATCAGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGTTGTAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCCCCTCATGTGGCTGGGCATCTATTGGGTGGAACTCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTGCGACCTGCTGTATTGATCACTGATGCTTATAATGCTCTAAATAATCAGCCATACAGACGGCAAAAGGACAAAGAATTTGGAGGTACTTGGAACCCTGCCAGAGCCTCCATCTCTTGCCTCATTCTCCACCCCCTACTTGTAGCAAAAAAGCATACTATTCAGAAGACCTTAAGATCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAACTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAGCAACGCTTTTCTTCTCAAGCATGTTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTTTAGCATCAATGGCGAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGAAGGAACAATCTAAAGCATCTCATGGAACTGAGAATGATACCAGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGGGGGTTCACATGGAGGTGCATACAGAGACATACTAATTGATGGCTTTGTTCCTCCTTCAACCAGCATTGCTCCAATGTTTCCCTTTTATGAAAACACCTCCGCGTGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGATATGGACCAATCAGCGATGCATGCTGGTGGGGATGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCGTTGCGTTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTATGGTGTTTTCTTACAACTGCACTTACGTTGTGCATGAATAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCCACTGAGCATCTTAAGCAACATTGTCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTAGGAGATTACGAAATCGCTTGGCTTGATGCTGAAGTAGGGAAGACCGAGAATGGAACATTGTCTTTACTTCCCCTCTCAAAGGCTGCTTCGCCTCATAAATCTGTTCTTGTTGGTGATTTGAAAATGGCCGACTTCAAACAATTTCTGGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCTTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATATTCAACCTCAAATTTTCTTTTTTGCAATTTCAAGTTTGAATTATCCGCAAGAGTAGGATCTTTCATGGCTTCCACTCCCCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTCGCTCTCAATTGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCAGGAGTGAGGAAATTGGATCCTCGCCTCCGCGTAATTTGTCACCCTATTGTTCATAATGGCGCCAAAATCGAGAGAGGAAATGGACTTCGTCGTATTGGAGTTTGTTTTGCTGGATCGGAGTCGACGGCTGATGGATTCTCTGGGTGGTCGGAATCGGATTCCCAGGGAGAGGCTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTTTTCTCTGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAACCGCTGATGGAGGCCTTAAGTACGCAGCAAGAGTTATTGTTGGACTCTGATACTGTTAATGATAAGCTTGGTGAAGATGAAAAGGAAGATAACAGTTTGAAGGCAGATGATGAAACTCTCGCTGGTGAAACAGGTAACCAAGAGGACTCTTGTTCATGTACAGAAAATGAAGAAACTCTCAACAAAAATAGAGTTGGTGACAGTGTTGATGTTGAGGAGTTAGCAGAAAATGATGTTGAATCTTCATCCAGCAATAACGATGTCAATAATGTTGCTTCCTTGCAAGAAGATTTCCAATCTGATTCCTCACTAACTGTTACATCAGTTGCTGCCGGAAGTTTGAGTACACTTATCTCACCTGAATCTGAGTTTGATTCTAACATAGCTTCTTGTTTTAAAGATGTAAACAACTGTCATTCTGGTGTAGAAGTCTTAACTTCTGAACCTGAAATGAATATATTGAAAGATGAACCAGACAACTTGCCTAACTCTAATACTAATTCATTAAACCTTAAAACTGATATTTGGGATGAAAGACCTGACACTGGTGAAAATTATGATTTCAGCTCTAATAAGTTACCAGTGTATGATGATAGTTCATCAAACTATAATTCTGGCAACCAGGATGAGACACTTGGTCCTGTAAATGAAATTACAGATTCTTCATTGGAAGGATTTTCTAGCATATCTGGCGACACAACCAAGGAATCAGGATTTTTTGACAGGGAGACTGTGGCTGAATCATCTGAAGGAGTTCTGAGCCCCAGAAAAACTGAACAGCTTTTATCTGAGGATACTGCATCAACCATAGAACAGCAAATAGAAAGAGGATTATCTGAAGCAGTATTAGTCTCTATCACGGATTATCCATCGGCAGATGATCAAGAGAAAAATCATGAAACTATCATGAATACTACTGCTGCCAAACCGGAACTACAAGAAATTTTATTTTCTTCTGCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCCGGCAAGGTCCTAGTTCCTGCAGTAGTAGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGTTTTAAAGGTGATAGAGGCTGAGGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGTTGGCTGGTGTCTGCAAGCAGTGCTCTTTCGAGGAACACAACATCCAAAGTATACCCAGCAATGTATATAGAAAATGTTACCGAGCTTGCTTTTGATGATATAACCCCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTGTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCCGAAAGCCCCCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGGCAGCTTCCAGAGGCAGATAGAAAGATGCTCCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGTAGGAGAACACGGAATAGTAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAACTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGCGGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCTGAAAGAGAGAGAGATAGTATCACCTTGATGAGGGAACGCGCTTCTATTGAATCTGAAATGGAAGTTCTTTCAAGATTAAGGAATGAGTTGGAGGAGCAGTTGCAAGGCCTGCTGAGTAATAAAGTAGAGGTATCCTTTGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCCTGCAGTATGAGCTTGAAGTTGAGAGAAAGGCGTTGTCTATGGCCAGAGCTTGGGCCGAGGACGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTCGAAGAGGCTAGGGATCGCTGGGAAAAGCATGGCATCAGAGTAGTCGTCGACAGCGATCTCCGTGAACAAGAATCTGCTGGCGATACCTGGCTTGATTCTAGCAAACAGTTTGCAGTCGAAGAAACCACAGACAGGGCTGAGAACTTAATGGAGAAGCTGAAAAGAATGGCTACAGAAGTAAGAGGGAAATCGAGAGACGTAATTGAGAAGATCATCGAGAAGATAGCTTTACTAGTATCAAACTTGAGACAATGGATTTCAAAAACTGGAGAACAGGCTGAAGATCTAAAGAATGTGGCGATTTCAAAGGCAAGTAGATCAGCAACAGAATTGCAACAGAGCACTGCAGAGTTGAGCTTGGCCCTGAAGGAGGGAGCAAAGCGTGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAATTTAGAACATCTTATGGTTAA 5394 42.27 MGTSVQVTPLCGVFNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGGTWNPARASISCLILHPLLVAKKHTIQKTLRSNGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRSNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKKEQSKASHGTENDTSDPMIIDASSNVAPDVGGSHGGAYRDILIDGFVPPSTSIAPMFPFYENTSAWDDFGEVINPDDYVIKDEDMDQSAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLRYMDFEGRSDGRSIKSILSHVAPLKLVWCFLTTALTLCMNKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEVGKTENGTLSLLPLSKAASPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLLYSTSNFLFCNFKFELSARVGSFMASTPPTCSPSSLQLRLALNCKNCGKFPSVLVRAGVRKLDPRLRVICHPIVHNGAKIERGNGLRRIGVCFAGSESTADGFSGWSESDSQGEALDLRRKKWFGGLVGIGITGFILFSGITFAAWSINKQNSSRQKPLMEALSTQQELLLDSDTVNDKLGEDEKEDNSLKADDETLAGETGNQEDSCSCTENEETLNKNRVGDSVDVEELAENDVESSSSNNDVNNVASLQEDFQSDSSLTVTSVAAGSLSTLISPESEFDSNIASCFKDVNNCHSGVEVLTSEPEMNILKDEPDNLPNSNTNSLNLKTDIWDERPDTGENYDFSSNKLPVYDDSSSNYNSGNQDETLGPVNEITDSSLEGFSSISGDTTKESGFFDRETVAESSEGVLSPRKTEQLLSEDTASTIEQQIERGLSEAVLVSITDYPSADDQEKNHETIMNTTAAKPELQEILFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIEAEVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYIENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDICSSLDEDQGPLYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPALVADLSVGEHGIVALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVAAVEKMAEEAKQELERLRSERERDSITLMRERASIESEMEVLSRLRNELEEQLQGLLSNKVEVSFEKERINKLRKEAEIENQEISRLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIRVVVDSDLREQESAGDTWLDSSKQFAVEETTDRAENLMEKLKRMATEVRGKSRDVIEKIIEKIALLVSNLRQWISKTGEQAEDLKNVAISKASRSATELQQSTAELSLALKEGAKRVVGDCREGVEKITQKFRTSYG 1797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8779340 8794717 + ClCG05G008140.1 Cla05g00890 272380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00890 1797 MobiDBLite consensus disorder prediction 955 970 - -
Cla05g00890 1797 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 800 1794 - -
Cla05g00890 1797 Coils Coil 415 435 - -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 1184 1199 - -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 1109 1199 - -
Cla05g00890 1797 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Cla05g00890 1797 Gene3D - 243 416 - -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 977 992 - -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 431 451 - -
Cla05g00890 1797 Coils Coil 1592 1619 - -
Cla05g00890 1797 Gene3D - 2 242 IPR036866 -
Cla05g00890 1797 Pfam Beta-Casp domain 265 388 IPR022712 -
Cla05g00890 1797 Pfam Metallo-beta-lactamase superfamily domain 22 197 IPR001279 -
Cla05g00890 1797 Pfam Cleavage and polyadenylation factor 2 C-terminal 681 774 IPR025069 -
Cla05g00890 1797 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 555 623 IPR011108 -
Cla05g00890 1797 SMART Lactamase_B_5a 17 222 IPR001279 -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 955 1001 - -
Cla05g00890 1797 Coils Coil 1522 1556 - -
Cla05g00890 1797 MobiDBLite consensus disorder prediction 1119 1168 - -
Cla05g00890 1797 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 640 IPR036866 -
Cla05g00890 1797 SMART Beta_Casp_2 265 388 IPR022712 -
Cla05g00890 1797 Coils Coil 1631 1658 - -
Cla05g00890 1797 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 800 1794 - -
Cla05g00890 1797 Coils Coil 1687 1714 - -
Cla05g00890 1797 Coils Coil 1561 1588 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00890 K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 - mcha:111011467 1575.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00890 Cla-Chr5:8779340 Cla11g01316 Cla-Chr11:26669700 1.01E-27 dispersed
Cla05g00890 Cla-Chr5:8779340 Cla05g02336 Cla-Chr5:34948131 5.70E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00890 Cla_Chr05 FPKM 10.237825 12.626248 13.011974 14.528211 23.521729 26.833887 23.969833 31.253153 29.088816 26.765646