Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00892 | ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGGTGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAAAGAGGGCAAGAAATCAGAAAGCCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAAGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGCTGAAAGTTCTTGGGTTCGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCTGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCCGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGATTCGGAAGCATGCCAAAGTCCTTAAATAGTAGTCCATACAGCAGCGGTATCTCATTCCACGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGTAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCACTACATTGTCTGGCCGCATGAATGGTATCTGA | 2712 | 45.02 | MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLKEGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSKGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGLKVLGFVAAMFKIGNSRELPVIPEHLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGFGSMPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSTTLSGRMNGI | 903 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8826684 | 8835364 | - | ClCG05G008180.2 | Cla05g00892 | 272382 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 285 | 412 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 884 | 903 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 371 | 403 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 36 | 72 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 103 | 117 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 313 | 340 | - | - | |
Cla05g00892 | 903 | ProSiteProfiles | Protein kinase domain profile. | 410 | 672 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00892 | 903 | SUPERFAMILY | Protein kinase-like (PK-like) | 408 | 761 | IPR011009 | - | |
Cla05g00892 | 903 | ProSitePatterns | Protein kinases ATP-binding region signature. | 416 | 439 | IPR017441 | GO:0005524 | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 886 | 903 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 747 | 783 | - | - | |
Cla05g00892 | 903 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 820 | - | - | |
Cla05g00892 | 903 | Gene3D | Transferase(Phosphotransferase) domain 1 | 408 | 691 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 1 | 176 | - | - | |
Cla05g00892 | 903 | CDD | STKc_MEKK1_plant | 409 | 672 | - | - | |
Cla05g00892 | 903 | Pfam | Protein kinase domain | 411 | 672 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 9 | 35 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 751 | 783 | - | - | |
Cla05g00892 | 903 | MobiDBLite | consensus disorder prediction | 204 | 225 | - | - | |
Cla05g00892 | 903 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA | 1 | 820 | - | - | |
Cla05g00892 | 903 | SMART | serkin_6 | 410 | 672 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01512 | Cla-Chr1:29593529 | Cla05g00892 | Cla-Chr5:8826684 | 1.27E-140 | dispersed | |
Cla01g01631 | Cla-Chr1:31110216 | Cla05g00892 | Cla-Chr5:8826684 | 1.40E-89 | dispersed | |
Cla03g00876 | Cla-Chr3:12031271 | Cla05g00892 | Cla-Chr5:8826684 | 1.20E-16 | dispersed | |
Cla05g00892 | Cla-Chr5:8826684 | Cla08g01536 | Cla-Chr8:28087275 | 5.92E-84 | dispersed | |
Cla05g00503 | Cla-Chr5:4650202 | Cla05g00892 | Cla-Chr5:8826684 | 1.12E-17 | transposed | |
Cla11g01746 | Cla-Chr11:31039965 | Cla05g00892 | Cla-Chr5:8826684 | 6.40E-55 | transposed | |
Cla06g00558 | Cla-Chr6:6766067 | Cla05g00892 | Cla-Chr5:8826684 | 1.78E-80 | transposed | |
Cla01g00446 | Cla-Chr1:4840377 | Cla05g00892 | Cla-Chr5:8826684 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80554 | PF00069 | Pkinase | 4.80E-72 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00892 | K20717 | - | csv:101214961 | 1583.16 |