Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00892 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGGTGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAAAGAGGGCAAGAAATCAGAAAGCCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAAGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAAAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGCTGAAAGTTCTTGGGTTCGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGCACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCTGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCCGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGATTCGGAAGCATGCCAAAGTCCTTAAATAGTAGTCCATACAGCAGCGGTATCTCATTCCACGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGTAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCACTACATTGTCTGGCCGCATGAATGGTATCTGA 2712 45.02 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLKEGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSKGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGLKVLGFVAAMFKIGNSRELPVIPEHLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGFGSMPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSTTLSGRMNGI 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8826684 8835364 - ClCG05G008180.2 Cla05g00892 272382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00892 903 MobiDBLite consensus disorder prediction 285 412 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 884 903 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 371 403 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 36 72 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 103 117 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 313 340 - -
Cla05g00892 903 ProSiteProfiles Protein kinase domain profile. 410 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00892 903 SUPERFAMILY Protein kinase-like (PK-like) 408 761 IPR011009 -
Cla05g00892 903 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Cla05g00892 903 MobiDBLite consensus disorder prediction 886 903 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 747 783 - -
Cla05g00892 903 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 820 - -
Cla05g00892 903 Gene3D Transferase(Phosphotransferase) domain 1 408 691 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 1 176 - -
Cla05g00892 903 CDD STKc_MEKK1_plant 409 672 - -
Cla05g00892 903 Pfam Protein kinase domain 411 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00892 903 MobiDBLite consensus disorder prediction 9 35 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 751 783 - -
Cla05g00892 903 MobiDBLite consensus disorder prediction 204 225 - -
Cla05g00892 903 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 820 - -
Cla05g00892 903 SMART serkin_6 410 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01512 Cla-Chr1:29593529 Cla05g00892 Cla-Chr5:8826684 1.27E-140 dispersed
Cla01g01631 Cla-Chr1:31110216 Cla05g00892 Cla-Chr5:8826684 1.40E-89 dispersed
Cla03g00876 Cla-Chr3:12031271 Cla05g00892 Cla-Chr5:8826684 1.20E-16 dispersed
Cla05g00892 Cla-Chr5:8826684 Cla08g01536 Cla-Chr8:28087275 5.92E-84 dispersed
Cla05g00503 Cla-Chr5:4650202 Cla05g00892 Cla-Chr5:8826684 1.12E-17 transposed
Cla11g01746 Cla-Chr11:31039965 Cla05g00892 Cla-Chr5:8826684 6.40E-55 transposed
Cla06g00558 Cla-Chr6:6766067 Cla05g00892 Cla-Chr5:8826684 1.78E-80 transposed
Cla01g00446 Cla-Chr1:4840377 Cla05g00892 Cla-Chr5:8826684 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80554 PF00069 Pkinase 4.80E-72 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00892 K20717 - csv:101214961 1583.16