Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00900 ATGGCCTCTCGTTACGAATTGGAAGTGAAAATTCAGTCCGCCAGAGATCTCAAGAACATCAACTGGAAATACGGCACCCTGAAGCCGTACGCCGTCGTTTGGATCGATCCGAAGAATAAATCGTCGACAAAGGTTGACCCCGAAGGAGATACATCGCCTTACTGGGACGAAACGCTCGTCATTCCGTTCTCATCGCCGATCGAAGATGCTACGTTGCACATCGACGTCGTCCACGTCGTCGATGCCGATGAAGACACCAAGCCGCTGATTGGCTCCGCTCGACTCCGCCTCTCGGAGGTCGTTGATGATGTCGGCCTCGGCGAAAGCTCTCAGCGAACTCTTCAATTGAAACGGCCCTCCGGCAGGCCGCAAGGGAAAGTCGAAGTTAAAGTAACAGTCCGAGAACCACGTTACCGAACATCCGATTCTTATTACGCGCCACCGTATGGAGTCCCACCGCCGGGTACCGCTAGGGATTTCTCTGCTCCGCCGCCTCCTCCCTATGCCGCTCCGTACTCTGCTCCTCCCAATCCTTACTATTCAACGGCTCCGCCGTCCGGATACCCCTACGGCGGGTACAACGCACCGGCTCCGTACGGTCAATCGAATTACGGGCAGCCGTCGTACGGTCAAGCGAGTTATGGACAGCCGGCGTATGGCGATCAGGCGTACTACGGGCAGCCAGAGGAGAAGAAGAAGAGCAAGTACGGGATGGGAACGGGACTGGCGGTGGGTGCGGTTGCTGGAGTTCTGGGTGGATTGGCCATCGGAGAGGGCGTCGATTACTTGGAGGACAAGATCGCCGACGACGCAGCGGAGAGGGTTGAGGATGACCTTGGCTACGGCGATGAAGATTTTTAG 861 56.79 MASRYELEVKIQSARDLKNINWKYGTLKPYAVVWIDPKNKSSTKVDPEGDTSPYWDETLVIPFSSPIEDATLHIDVVHVVDADEDTKPLIGSARLRLSEVVDDVGLGESSQRTLQLKRPSGRPQGKVEVKVTVREPRYRTSDSYYAPPYGVPPPGTARDFSAPPPPPYAAPYSAPPNPYYSTAPPSGYPYGGYNAPAPYGQSNYGQPSYGQASYGQPAYGDQAYYGQPEEKKKSKYGMGTGLAVGAVAGVLGGLAIGEGVDYLEDKIADDAAERVEDDLGYGDEDF 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8918707 8919567 - ClCG05G008247.1 Cla05g00900 272390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00900 286 Gene3D C2 domain 2 144 IPR035892 -
Cla05g00900 286 Pfam C2 domain 6 101 IPR000008 -
Cla05g00900 286 MobiDBLite consensus disorder prediction 106 164 - -
Cla05g00900 286 SMART C2_3c 6 109 IPR000008 -
Cla05g00900 286 CDD C2_SRC2_like 6 129 IPR044750 GO:0006952
Cla05g00900 286 PANTHER PROTEIN SRC2-LIKE 1 282 - -
Cla05g00900 286 MobiDBLite consensus disorder prediction 147 164 - -
Cla05g00900 286 PANTHER INGRESSION PROTEIN FIC1 1 282 - -
Cla05g00900 286 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Cla05g00900 286 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00900 - - - csv:101213996 425.631
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00641 Cla-Chr5:5987134 Cla05g00900 Cla-Chr5:8918707 3.35E-10 dispersed
Cla05g00900 Cla-Chr5:8918707 Cla11g01010 Cla-Chr11:19785520 3.46E-13 dispersed
Cla05g00900 Cla-Chr5:8918707 Cla02g01526 Cla-Chr2:29805955 2.37E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g733 . . . . . . . . . Cmo18g01288 . . . . Sed07g1008 . Cpe14g00093 Bhi01g01270 Tan01g0217 Cmetu06g1400 . Hepe07g0137 . . . . . . . . . . . . . Lsi05g01208 . . Cme06g01023 . . . . . . . . . . . Cma16g00109 Cma18g01261 Car16g00097 Car18g01170 Cpe09g00076 . . . . . . . . Cla05g00900 Cam05g0984 Cec05g0989 Cco05g0987 Clacu05g0972 Cmu05g0929 Cre05g1014 . Csa03g01735 Chy06g00966 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009669 2 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00900 Cla_Chr05 FPKM 9.435862 12.183449 17.016176 18.67561 30.812626 30.964306 33.120087 28.848791 27.725018 28.270658