Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00903 ATGGTAGTTTCACTGAGACTACCTTTGATCTCCTCCTTGCTTTCCCCAGCCTCATCTCGCCCTTCAAACTTCGCCTTCTCCAGGCGAGCTTTGGGGATTTCATGGAGGCAGCAACGCCCGTTACGGTTGCCGCTGCTTTCTTCTAGTTTCTCTGCTCGAAGTTCGTCCACCGGCACCGAAATTCGTGTCGACAACTCGAAGAATCGAGTTCCGGAAGGAGCTATCACGCCTCGGTCGCAGGACTTCAATGCTTGGTATCTGGATATTATTGCCAACGCTGAGCTCGCGGATTATGGTCCTGTTCGAGGTACCATGGTTATTCGTCCCTATGGCTACGCCATATGGGAGGCAATACAGGTATATTTAAATGCCAAGTTCAAGGAAACCGGCCACGAGAATATGTACTTTCCGCAGTTTATACCATACTCTTTTATTGAGAAAGAAGCTAGTCATGTCGAGGGGTTTAGTCCAGAGTTAGCTCTTGTAACAATTGGAGGAGGGAAAGAACTCGAAGAAAAGCTTGTGGTTCGACCGACAAGTGAAACCATTGTGAATCACATGTTTACTCAGTGGATTCATAGTTACCGTGATCTTCCTTTGATGATTAATCAGTGGGCCAATGTTACTAGATGGGAGATGCGCACGAAACCATTTGTTAGGACTCTTGAATTTCTCTGGCAGGAGGGTCATACTGCTCATGCCAGTCCAGAAGAGGCAGAAAAAGAGGCTATTCAGATGATTGACATATATACAAAATTTTCTTATGAGCAAGCAGCAATACCTGTTATTGCAGGTCGAAAATCAAAGATGGAGACATTTGCTGGTGCAGACAAGACCTATACAATAGAGGCCATGATGGGGGATCGAAAGGCATTGCAGGCAGGAACCAGCCACAACCTGGGGCAAAACTTTTCTCGTGCTTTTGGAACACAGTTCACAGATGAAAATGGACAAAGGCAACATGTATGGCAGACATCATGGGCAGTGAGTACGCGTTTTGTTGGAGGAATTATTATGACTCATGGAGATGATGGAGGTTTAATGCTTCCGCCAAAGCTTGCTCCAATACAGGTGGTAATCATACCCATCTGGAAGAAGGATGGTGATAAAGCTGAAGTTCTTAGTGCTGCTTCTTCTGTAAAAGAAAGTCTTCAAACTGCAGGGATAAAGGTTAAACTTGATGAGTCAGAACAGAGAACTCCAGGATGGAAATTCAATTTCTGGGAGATGAAGGGCGTTCCTTTGAGGATTGAGATTGGGCCCAAGGATGTTGCAAGTCAAAGTGTCGTTATATCTAGGAGAGACATTCCTGGAAAGCAAGGGAAAGTTTTTGGAATATCTATGGAACCTTCTATTTTAGAAGCTTATGTAAAAGGAACATTGGATGAGATCCAGTTATCTCTTCTTCAACGGGCAAAAACTTTTCGTGACAGGAAAGAAGAGATGGGGAATGAATGGATGTGCCTTGCAGTTCTCAATTCATCAGCTCCTGTGGTAGTCATTCTTGATCAAAATTTGAATAACATTGTGGATGTGAGCTCATATCATGAACTTAAAGAGGCAATCTCCGAGGGCAAATGGGCTAGGGGTCCTTGGTCAGCTAGTGACAAAGATGAATTGAGAGTTAAAGAAGAAACAGGAGCAACAATTAGGTGCTTTCCCTTTGAACAGCCACAAGGGCCTAAAACATGTCTGATGACTGGTAACCCTGCTGAGGAAGTTGCCATTTTTGCAAAGTCTTACTGA 1746 44.33 MVVSLRLPLISSLLSPASSRPSNFAFSRRALGISWRQQRPLRLPLLSSSFSARSSSTGTEIRVDNSKNRVPEGAITPRSQDFNAWYLDIIANAELADYGPVRGTMVIRPYGYAIWEAIQVYLNAKFKETGHENMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHASPEEAEKEAIQMIDIYTKFSYEQAAIPVIAGRKSKMETFAGADKTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHVWQTSWAVSTRFVGGIIMTHGDDGGLMLPPKLAPIQVVIIPIWKKDGDKAEVLSAASSVKESLQTAGIKVKLDESEQRTPGWKFNFWEMKGVPLRIEIGPKDVASQSVVISRRDIPGKQGKVFGISMEPSILEAYVKGTLDEIQLSLLQRAKTFRDRKEEMGNEWMCLAVLNSSAPVVVILDQNLNNIVDVSSYHELKEAISEGKWARGPWSASDKDELRVKEETGATIRCFPFEQPQGPKTCLMTGNPAEEVAIFAKSY 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8965294 8971805 + ClCG05G008280.1 Cla05g00903 272393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00903 581 Gene3D Bira Bifunctional Protein; Domain 2 70 350 IPR045864 -
Cla05g00903 581 PANTHER BNAC09G28510D PROTEIN 507 581 - -
Cla05g00903 581 PANTHER BNAC09G28510D PROTEIN 2 479 - -
Cla05g00903 581 TIGRFAM proS_fam_I: proline--tRNA ligase 76 581 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 Hamap Proline--tRNA ligase [proS]. 75 581 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 102 350 IPR006195 -
Cla05g00903 581 SUPERFAMILY Class II aaRS ABD-related 346 477 - -
Cla05g00903 581 Pfam Anticodon binding domain 357 436 IPR004154 -
Cla05g00903 581 PRINTS Prolyl-tRNA synthetase signature 133 151 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 PRINTS Prolyl-tRNA synthetase signature 204 212 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 PRINTS Prolyl-tRNA synthetase signature 174 185 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 PRINTS Prolyl-tRNA synthetase signature 213 224 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 PANTHER PROLYL-TRNA SYNTHETASE 507 581 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 PANTHER PROLYL-TRNA SYNTHETASE 2 479 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 CDD ProRS_anticodon_zinc 346 581 - -
Cla05g00903 581 Gene3D - 510 581 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 SMART ProRS_C_1_2 515 581 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 169 338 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla05g00903 581 Gene3D - 351 477 IPR036621 -
Cla05g00903 581 CDD ProRS_core_arch_euk 81 340 IPR033721 -
Cla05g00903 581 SUPERFAMILY C-terminal domain of ProRS 509 581 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Cla05g00903 581 SUPERFAMILY Class II aaRS and biotin synthetases 81 344 IPR045864 -
Cla05g00903 581 Pfam Prolyl-tRNA synthetase, C-terminal 515 581 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00903 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - csv:101217773 985.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00903 Cla-Chr5:8965294 Cla07g01496 Cla-Chr7:32214865 5.72E-37 dispersed
Cla05g00903 Cla-Chr5:8965294 Cla05g00905 Cla-Chr5:8971647 8.33E-06 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00903 Cla_Chr05 FPKM 0.0 0.118181 17.3123 16.111439 30.915005 27.617788 32.37582 0.037233 0.0 0.0