Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00907 ATGTCTCCGGCTCCGTTCCCACAACAAACCATTTCCATTTTAAAGCTAAACTTCTTCCTTCTCTGCAACTCTCTGCCGCCTCCCATGGCGATCTCCAAGTTCCTCTTTCTTCTTCTTTTCCTTCCTTTTCTATCTGCTGAATTTGTTCCCTCTGACATTTACCTTCTCAGCTGCGGCTCATCCTCTAATTCCTCCTTTTTTAATCGCATCTTCGTCGGCGATTCATTGAAACCCGCCTCCGACTTTCTCGCCGCCGGTAAATCGGTGGCGGTTTCCTATCGAAATCCACCTCCGGATTCTCCCTCTTTGTATCACACAGCCAGAGTTTTCATCAGGGCCTCAAGCTACAAGTTCAACATCAAGAAGAACGGTACTCACTTGTTACGGTTCCATCTTTCGCCATTTTCGGCACCGGAATTCGCTTTACATTCTGCAAATTTCACCATCTCGGCTAATGGATTTTTGCTTTCTAGTATTTCGCACGTTAACGATTCTGTAATTAAAGAGTTCATGGTGAGAATTGACAACAACGTGCTCGAAGTCGAGTTCGAACCGGCTTCGAGTTCGGGCTTTGGATTCGCGAATGCGATCGAGGTATTTTCAGCTCCTAAAGAACTCATTACCGATAATGGAGCTAAGCTTGTGGATTCTAATGGAGGTCGACAATATTACAAACTCACATCACAAATTTTGGAAACCAAATACAGAATTAACGTTGGGGGTCCAAAATTGACCCCGTTTAACGACACTCTGTGGAGAACTTGGGTGCCCGACGAGCCTTACCTGGCTTTAAAGTCTGCGGCAAAGCTCGCTACAACTGTTCACACTCCGAACTATGAGGCCGGCGGGGCCACCAGGGAGGACGCGCCGGACATCGTTTATATGACGGCGCAGCAGATGAACAAGGACAACTCAATTTCGGGTGCAAAATTCAACCTCACCTGGAACTTTCCATTGGATTCTAATGGCGTGAAGTACTTGGTTCGTTTGCATTTCTGTGATATTGTTAGCACCGCTCTTAATCAGTTATATTTCAACGTGTATATCAACGGCTTTCCTGCATATAGGGACCTGGATTTGTCATCTCTTTCCCTTCAGCTTTCAACTCCTTTTTATTTTGATTTCATTGTGGATACTGGCAATTCTGGGAATATACAGATTAGTGTTGGACCTTCTGATCTGAGCAGTTCTTTGAGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAAATGGTGAATGCTAAGGATATGTTTTCAGAAACTGAGAAGAGGAAAAGAAATTTATGGGTTATTATAGGTCCTGTTGTTGGTGGATTTCTTGGTTTATGTTTGGTTGTTGCTGCAATTCTTGCTTTAGGATGCAGGAGGAGGAAGAAACCGAAGCCGAGACGGGCGGAGAGCGCAGGCTGGACTTCGGTTCAGGCGTATGGAGGAGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTACATCTTTTGGGCCAAATGGATACCACAGCTTGAAGATCCCCTTCAATGAAATTCAGTCAGCAACAAACAATTTCGACAAGAGTTTGATCGTTGGTTCAGGCGGATTTGGTACGGTTTACAAAGGGGTTCTTCGGGACAATATAAAGGTTGCTGTGAAGAGAGGTGTGCCAGGATCTCGGCAGGGCCTTCCTGAATTCCACACAGAGATTGCTATCTTGTCGAAGATTCGCCATCACCATCTTGTTTCGCTTGTTGGATACTGTGAAGAACAGTCAGAAATGATACTGGTTTATGAATATATGGAGAAAGGTCCATTGAAAAAACAGTTATATGGCTCGGTCGTAACGCCATTGTCATGGAAGCAACGGCTTGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGTTTTGCACAGGGCATCATCCACCGCGATATCAAGTCAACCAACATTTTGCTGGATGAGAATTATGTTGCTAAAGTTGCTGATTTTGGTCTTTCGAGATCAGGCCCTCGTCTTGACGAGACACATGTTAGTACTGGAGTAAAAGGCAGCTTTGGCTATTTAGATCCGGAGTACTTTCGAAGACAACAACTAACTGATAAGTCAGATGTATATTCATTTGGAGTAGTGCTCTTTGAAGTTCTTTGTGCCAGGCCTGCTGTTGATCCATTGCTTGCTAGGGAACAAGTAAATCTCGCCGAATGGGCACTGCATTGGCAAAGGAAAGGGATGCTCGAAAAGATTGTCGATCCACATTTGGTCGGGCAAATCAATCCGAATTCGTTAAAGAAATATGGTGAAACAGCAGAAAAATGTTTGGCTGACTATGGTATTGACAGACCAACCATGGGGGATGTCTTATGGAACTTGGAATATGTTCTTCAACTACAAATCGGGCCATCAAACGAACCATCAGAACCCGTGGACGTCGACGACTCCGACTTTCCAACATCCACAGCTATTCATCCAAGCAACTTGAGGAGACATTCAGATGAAGGTACTGGCAATTATTCAGACATAAGTACAACCAAAGTTTTCTCCCAGTTGCTTACTAATGATGGAAGATAG 2559 44.43 MSPAPFPQQTISILKLNFFLLCNSLPPPMAISKFLFLLLFLPFLSAEFVPSDIYLLSCGSSSNSSFFNRIFVGDSLKPASDFLAAGKSVAVSYRNPPPDSPSLYHTARVFIRASSYKFNIKKNGTHLLRFHLSPFSAPEFALHSANFTISANGFLLSSISHVNDSVIKEFMVRIDNNVLEVEFEPASSSGFGFANAIEVFSAPKELITDNGAKLVDSNGGRQYYKLTSQILETKYRINVGGPKLTPFNDTLWRTWVPDEPYLALKSAAKLATTVHTPNYEAGGATREDAPDIVYMTAQQMNKDNSISGAKFNLTWNFPLDSNGVKYLVRLHFCDIVSTALNQLYFNVYINGFPAYRDLDLSSLSLQLSTPFYFDFIVDTGNSGNIQISVGPSDLSSSLRYNAILNGAEIMEMVNAKDMFSETEKRKRNLWVIIGPVVGGFLGLCLVVAAILALGCRRRKKPKPRRAESAGWTSVQAYGGGSSDSKLSRGSTLTSFGPNGYHSLKIPFNEIQSATNNFDKSLIVGSGGFGTVYKGVLRDNIKVAVKRGVPGSRQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYMEKGPLKKQLYGSVVTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLAREQVNLAEWALHWQRKGMLEKIVDPHLVGQINPNSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIGPSNEPSEPVDVDDSDFPTSTAIHPSNLRRHSDEGTGNYSDISTTKVFSQLLTNDGR 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9007152 9009710 + ClCG05G008320.2 Cla05g00907 272397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00907 852 Pfam Protein tyrosine and serine/threonine kinase 522 714 IPR001245 GO:0004672|GO:0006468
Cla05g00907 852 ProSiteProfiles Protein kinase domain profile. 517 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00907 852 Gene3D Phosphorylase Kinase; domain 1 482 592 - -
Cla05g00907 852 Gene3D Transferase(Phosphotransferase) domain 1 593 800 - -
Cla05g00907 852 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 41 804 - -
Cla05g00907 852 CDD STKc_IRAK 523 788 - -
Cla05g00907 852 Gene3D - 52 203 - -
Cla05g00907 852 Gene3D - 231 414 - -
Cla05g00907 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Cla05g00907 852 Pfam Malectin-like domain 56 411 IPR024788 -
Cla05g00907 852 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524
Cla05g00907 852 SUPERFAMILY Protein kinase-like (PK-like) 494 787 IPR011009 -
Cla05g00907 852 MobiDBLite consensus disorder prediction 799 836 - -
Cla05g00907 852 PANTHER OS07G0166700 PROTEIN 41 804 IPR045272 GO:0004714|GO:0006468
Cla05g00907 852 SMART serkin_6 517 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00907 - - - csv:101211413 1488.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00907 Cla-Chr5:9007152 Cla06g01573 Cla-Chr6:29289936 0 dispersed
Cla06g00324 Cla-Chr6:4137303 Cla05g00907 Cla-Chr5:9007152 1.02E-80 dispersed
Cla05g00907 Cla-Chr5:9007152 Cla11g01796 Cla-Chr11:31629607 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80555 PF12819 Malectin_like 3.20E-34 CL0202 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00907 Cla_Chr05 FPKM 0.031631 0.154839 7.277078 8.46741 35.538227 33.753117 37.835651 0.0 0.0 0.0