Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00909 ATGAGCGTACTTTTAATGAGCCGTTTATTGACTAGTTTATTCCATTCAATCCACAGCCATCAGGGAAGGGCTCATGTGAGTTGCACGTGTTTGCTGCTACCATTGGAATATAATAAAGCATCTATTGGTTCATTTGATATGCACAAAATGGATAAATGGAAAGATTCTGGAAAACTAGGACGACTGATGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTCTGTTGTCACCTGTTGTCTCCGTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGTATCATGATGAAAGGACGAAAAAACAATTACGAGGATATATATACTACTTACAACTATTAGATATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAACCTATCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGGCGGTTAGAAAAAGCCCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTTTGCATGTCCTGATTGGTGAAGATTCAGATGACCCATACAAGATTCTTCTTAAGAACGACGGTCTCAACCCTTGGGAGTGCCCTGGGCAGTTTGACCACGTAATGAATGTTACTAGACCTGGCATTCCAGTGCAGGAGTTCGGGAGGTGCTCCCTTGAAGGGACTGGTTGGACCTCTAATATCGATAGATTTGGATCAATGTGGCATGGTTTTAGGAATGACTACTGGTCAGTTTCCGCTGGACCTTATGCTGAAGATCACGCGTTATGTTTCAAGCAAGTTGATGGTGCTGTAAATGAGATTTCTGCTGGTATTATAGCGGCGCAGGCTGTCTCTTCACTTCAGATAACGGTAGATGGGGATGAAGAAATCAACGTCCTTAACAGAATGCGAAGGAGTATAATCATTCGCCTCTACATTGTCAACCTGAATCCTGCCATTTTACACGGGAGATTTGTCGACTTTTTGTGGGGGAGTTTTAAGTTATCTTGTACCCAGAGTCTTGATGTGTTTGTTGGTGTGCTCCAAGGGCACGCCCAGCAGCAGTTAATGCATTCTTGCCAAGCCTGTTCACTGAGATCATTGTTCCTTAGTCCTGTGGCTTGTTGA 1215 42.88 MSVLLMSRLLTSLFHSIHSHQGRAHVSCTCLLLPLEYNKASIGSFDMHKMDKWKDSGKLGRLMPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWYHDERTKKQLRGYIYYLQLLDMASFVASMGNKGQPIVKKAKKKQVKDELDRQKQAEKKKRRLEKALATSAAIISELEKKKQMKKEEQQRLDEEGAAIAEAVALHVLIGEDSDDPYKILLKNDGLNPWECPGQFDHVMNVTRPGIPVQEFGRCSLEGTGWTSNIDRFGSMWHGFRNDYWSVSAGPYAEDHALCFKQVDGAVNEISAGIIAAQAVSSLQITVDGDEEINVLNRMRRSIIIRLYIVNLNPAILHGRFVDFLWGSFKLSCTQSLDVFVGVLQGHAQQQLMHSCQACSLRSLFLSPVAC 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9025209 9028822 - ClCG05G008340.2 Cla05g00909 272399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00909 404 Coils Coil 138 196 - -
Cla05g00909 404 MobiDBLite consensus disorder prediction 140 160 - -
Cla05g00909 404 MobiDBLite consensus disorder prediction 138 160 - -
Cla05g00909 404 PANTHER OS02G0104200 PROTEIN 124 334 - -
Cla05g00909 404 PANTHER OS02G0104200 PROTEIN 124 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00909 - - - csv:101212865 389.808
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g752 . . . Bda07g01900 Bpe03g00151 . Bma10g01246 Bma14g02046 Cmo16g00109 Cmo18g01297 . . . . . . Cpe14g00088 . . . . . . . . . . . . . . . . Cone14ag0060 . Lsi05g01198 . . . . . . . . . . . . . . Cma16g00102 Cma18g01267 . Car18g01176 Cpe09g00070 . . . . . . . . Cla05g00909 Cam05g0995 Cec05g0998 Cco05g0996 Clacu05g0983 Cmu05g0939 Cre05g1023 . Csa03g01743 Chy06g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003943 1 0 0 2 2 1 2 1 1 1 1 1 2 1 2 2 1 0 2 1 1 1 1 1 2 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00909 Cla_Chr05 FPKM 12.097422 15.330157 12.531441 11.739964 15.800157 13.677254 14.135713 13.961528 13.387561 14.425108