Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00927 ATGCTATGTAGAACATTCGCCAAATCTCTCAACAGAAATGAACTCTATCGTCTGGAAGAAAGCTGCTCTCAGCTTATTTCAATCTGCAATTCCAAATCCTTAAAAGAGGGCGTTTGTGTTCATAGCCCGATTATCAAGCTCGGTCTTCATGGTAATTTGTATCTGAGCAATAATTTGCTAACTCTTTATGCTAAACGATTTGGACTCAAACAAGCACGTAACCTGTTCGATGAAATGCCTGACAGAGATGTGGTGTCCTGGACCACAATGCAGGCTGCTTATGTCAGGAACAGAAGCTACAATGAAGCTTTTGAATTGTTTGATTTGATGCTAACATTGGGTCATTGTCCAAATGAATTCACGCTTTCGAATTTGATCCGATCCTGCTCCGAAACTGGAGAACTGGAGCTTGGAAGTTGTGTCCATGGCTATGTCATAAAGGGTGGCTTTGAGTCAAAGCCAGTTCTGGGATGCACCTTGATTGATTTGTATGCAAAGTGTGATTGCTCTGAGGAAGCTTATGATGTTTTCAAAAATATCGACGATGTTGATACCGTTACTTGGACCGTGATGATTTCTTCATTAGTGCAAGCACAGAAATGGGACGAGGCTCTTCAGTTATATGTCACGATGATGGATTCTAGAGTCACTCCTAATGAGTTCACTTTTACAAAACTTTTAGCCACAACCAATTTTCTGGGTTTGAAATATGGGAAGTTACTCCATAGTCACATGATAACATTGGGAGTCAATTTGAACGTAGTTCTAAAGACGGCGCTTGTCGATATGTATTCAAGATACCAAGAGTTAGAAGATGCAATGAAGGTGGCAAATCAAACACCTGAGAAAGACGTGTTTTTGTGGACCTCTATTATCTCCTGCTTCAATCAAAATTTGAAGGTCAAGGAGGCTATTGCTGCATTTCAAGAGATGAGAGTTTCTGGAATTTTACCAAACAGTTTCACATATTCCAGTGTGATAAGTGCCTGCACATCGATCCCATCACTTAAATTAGGTAAGCAAATTCACTTGCAAGTAATATTGGCTGGGTTGGAGGCTGATGTTTGCGCTGGGAGTGCACTAATTAATATGTACATGAAATGTTCTAACTTCATGGATGATGCCTTGAAAGTGTTTAGGACAATTACTTCCCCAAGTGTTATTTGTTGGACTTCTTTAATATCTGGTCTTGCCGAGCATGGTTGTGAACAAGATTGTTATAGATATTTTTTGGATATGCAAGCAGCAGGAGTGCAGCCAAATTCCTTCACTCTTTCAAGCATCCTTGGGGCCAGCAGTTTAGCAAAATCACACAATCAAACATCGATGTTCCATGGATATATACTAAAAATGAGGGCTCACCATGATATTGTTGTTGGAAATGCTCTTGTGGATGCTTATGCTCGATCTGGAAATGTGGATGATGCTTGCCGAGTGATTAGAACAATGAACCATCGGGATGCCATCACTTACACTAGCTTGGCCACGAGACTGAATCAGATGGGTGATCATGAACTGGCACTAAAAACCATTGATTCCATGCGTGCCGACAATATTGAGATGGATGAAATTAGCTTGACAAGCTTGGTATCTGCGTTAACAGGCCTAGGCATAGTTGAAACTGGGAAACAACTTCATTGCTATGCTTTGAAGTATGGCTTAGACAATACCCGCTCAGTAAAAAATAGTCTGATGGACTTGTATGGCAAAGTTGGATGCTTGAAGGATGCAAGTAAAGCTTTTGAAGAAATAATCGAACCCGACATCGTTTCTTGGAACGGTATGATATCTATATTAGCACTCAACGGGCATATCTCCGCTGCTCTCTCTACCTTCGATAATATGAGATTAGCTGGCCTAGAGCCCGATTCCATCACATTCTTGTCAATACTTTCAGCTTGCAGTCAAGGTAGTTTGGTTGATTTTGGAATGAACTACTTTCATTCTATGAAAGCAACACATAATATAGAGCCAGAATTGGATCATTATGTTAGTATAGTTGATCTCCTAGGTCGTGTTGGACAACTAGAGAAGGCAATGGAAATTGTCGAATCCATGCCATATGAGGCAGATGCCAAAATCTACAAGACATTGTTGAAAGCTTGCAAATTCCATGGGAACATGCAGCTTGGAGAAGATGTTGCAAGAAGAGGACTTCAACTTAACCCATACGATTCATCTTTCTATTTGCTGCTGGCCAACTTGTACGATGGATACAACCGACATGATTTAAGTGCAAAAACTCGTAAGCTGATGCAAGATCGTGGGGTGAGGAAGAGTACTAGCCAGAGTTGGTTAGAATTACGTAGTAAGATTCATCTCTTCGTCACAGGAGATCGATCACACCATCAGATCAATGACATCCAAGAAAAGTTAGAATTCCTCAGAGCTGAGTTCAAGAGTAGGGGGTTTTTGTATCATGAAGATGAAAATTCATCTCATCATAGTGAAAAATTGGCTCTTGCATTTGGCCTAGTTAATATGCCACCCACAGCTGTTGTACGGATAATGAAGAACATAAGCATTTGCAGAGAATGTCATGACTTCATATTGCTAGTAACAAAGGTGGTCGAGATGGAAATCATTGTGAGAGATGGAAGCAGGCTCCATGTGTTCAAAAATGGAAGCTGCTCTTGCAGCCATTTCTCATGA 2652 40.69 MLCRTFAKSLNRNELYRLEESCSQLISICNSKSLKEGVCVHSPIIKLGLHGNLYLSNNLLTLYAKRFGLKQARNLFDEMPDRDVVSWTTMQAAYVRNRSYNEAFELFDLMLTLGHCPNEFTLSNLIRSCSETGELELGSCVHGYVIKGGFESKPVLGCTLIDLYAKCDCSEEAYDVFKNIDDVDTVTWTVMISSLVQAQKWDEALQLYVTMMDSRVTPNEFTFTKLLATTNFLGLKYGKLLHSHMITLGVNLNVVLKTALVDMYSRYQELEDAMKVANQTPEKDVFLWTSIISCFNQNLKVKEAIAAFQEMRVSGILPNSFTYSSVISACTSIPSLKLGKQIHLQVILAGLEADVCAGSALINMYMKCSNFMDDALKVFRTITSPSVICWTSLISGLAEHGCEQDCYRYFLDMQAAGVQPNSFTLSSILGASSLAKSHNQTSMFHGYILKMRAHHDIVVGNALVDAYARSGNVDDACRVIRTMNHRDAITYTSLATRLNQMGDHELALKTIDSMRADNIEMDEISLTSLVSALTGLGIVETGKQLHCYALKYGLDNTRSVKNSLMDLYGKVGCLKDASKAFEEIIEPDIVSWNGMISILALNGHISAALSTFDNMRLAGLEPDSITFLSILSACSQGSLVDFGMNYFHSMKATHNIEPELDHYVSIVDLLGRVGQLEKAMEIVESMPYEADAKIYKTLLKACKFHGNMQLGEDVARRGLQLNPYDSSFYLLLANLYDGYNRHDLSAKTRKLMQDRGVRKSTSQSWLELRSKIHLFVTGDRSHHQINDIQEKLEFLRAEFKSRGFLYHEDENSSHHSEKLALAFGLVNMPPTAVVRIMKNISICRECHDFILLVTKVVEMEIIVRDGSRLHVFKNGSCSCSHFS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9154698 9157349 - ClCG05G008505.1 Cla05g00927 272417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 6 142 IPR011990 GO:0005515
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 540 815 IPR011990 GO:0005515
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 344 436 IPR011990 GO:0005515
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 437 539 IPR011990 GO:0005515
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 143 233 IPR011990 GO:0005515
Cla05g00927 883 Gene3D Tetratricopeptide repeat domain 234 337 IPR011990 GO:0005515
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 461 483 IPR002885 -
Cla05g00927 883 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Cla05g00927 883 Pfam PPR repeat family 283 330 IPR002885 -
Cla05g00927 883 Pfam PPR repeat family 82 129 IPR002885 -
Cla05g00927 883 Pfam PPR repeat family 587 634 IPR002885 -
Cla05g00927 883 Pfam PPR repeat family 184 227 IPR002885 -
Cla05g00927 883 Pfam DYW family of nucleic acid deaminases 813 882 IPR032867 GO:0008270
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Cla05g00927 883 PANTHER - 308 533 - -
Cla05g00927 883 PANTHER - 505 816 - -
Cla05g00927 883 PANTHER - 16 404 - -
Cla05g00927 883 Pfam PPR repeat 389 418 IPR002885 -
Cla05g00927 883 Pfam PPR repeat 489 519 IPR002885 -
Cla05g00927 883 Pfam PPR repeat 461 484 IPR002885 -
Cla05g00927 883 Pfam PPR repeat 663 686 IPR002885 -
Cla05g00927 883 Pfam PPR repeat 159 178 IPR002885 -
Cla05g00927 883 Pfam PPR repeat 562 586 IPR002885 -
Cla05g00927 883 PANTHER BNACNNG15330D PROTEIN 505 816 - -
Cla05g00927 883 PANTHER BNACNNG15330D PROTEIN 308 533 - -
Cla05g00927 883 PANTHER BNACNNG15330D PROTEIN 16 404 - -
Cla05g00927 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00927 - - - mcha:111011682 1515.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00927 Cla-Chr5:9154698 Cla05g00861 Cla-Chr5:8519771 1.04E-39 dispersed
Cla08g01457 Cla-Chr8:27456476 Cla05g00927 Cla-Chr5:9154698 8.76E-28 dispersed
Cla05g00927 Cla-Chr5:9154698 Cla09g00659 Cla-Chr9:6258153 3.21E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00927 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0