Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00933 ATGGCTGTAGGTGCTAATTCTTTGTTCTTGGCTTTGGCTATTGCATGGCTGATCAGGGCTTGCATGGCCGCTCCAATTGGTATTAGATCCAAGTTGTTAGCTAGTAATCGCAATCAAATGTGGCTTTCTGATAATGGCACATTTGCCTTTGGATTTAGTCCGGTGAGTAGTAGCGGTGGTAGCGTTAGTGACCCATTTCTGCTTGCCATTTGGTTCGCAAAACTTCCGGGAGATCGAACCATAATTTGGTCAGCTAATAGTAACAAACTACAAAATTCCTCTGCTCTTCGTTTAAGCGACCATGTTTCATTTCTCTCTCAATCATTTACTTATAGAAACTCTCCAGTCTCCAAGAATGCGATCGTGGAGCTCGATGCCACCGGAAACCTCGTCCTCACCGACGGCGGCGGCGGCGCCGTCTGGTCCTCCAACACCTCCGGAGATGGAGCAGAGTTTGCCGTCATGTCGGAATCCGGAAATTTCATCCTCTTCAACGCCGAACGAAGCCCTGTTTGGCAGAGCTTTTCACACCCTTCTGATACCCTTCTCCCAAATCAACCTCTATCAGTCTCTTTAGAGCTCACAACGTCAAAATCCCCTTCCCATGGCGGATATTATACCCTAAAAATGCTCCAACAGCGCACCACTCTCAAACTCGCCTTGACTTTCAATTTGCCTGAAAATTACGAGGGTTTGCCCGAATCTTACGCAAATTACTCATACTGGTCGGCCCCTGAAATTTCCAATGTAACAGGGGAAGTCATTGCTGTTTTAGACGAAGGTGGAAGCTTCGGTGTTGTGTATGGTGACTCCTCTAATGGTGCAGTTTATGTCTACAAGAACGATAACGATAATGGCGGATTATCGGCTTCGACAAATCAGTCGATTCGTAATGTACGCACACAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGATGATGATGTTAATGGGTCCCGGCAGTGGGTGCCGGAATGGGCAGCGGTTTCAAATCCTTGTGATATTGCTGGAATCTGTGGAAATGGGATTTGCTATTTGGATAAAAGCAAGACGAATGCGTCTTGTTCTTGCTTGCCGGGGACTTTCAAGGACAACGGTGGCAGCCAGTGCTTTGAAAATTCATCGTCGGTGGGGAAATGCGTTGGCCAAAATCATCAATCTCCCTCCACTCAGTACAGGATTTCTCCTGTTCAGCAAACAAATTACTATTACTCTGAGTTCTCTGTAATTGCAAATTACAGCGATATCAACACAGTATCAAAATGTGGTGATGCTTGCTTAACTGATTGTGAGTGTGTTGCTTCTGTTTATGGGCTTGATGATGAGAAGCCTTACTGTTGGGTGTTGAGAAGCTTAGATTTTGGTGGATTTGAGGATGCTGGTTCGACTCTCTTTGTGAAGGTCAGGTCGAATGGCTCAATACCAGAAGCCAATGGGCCAGGAGCTGAAAGAGATTCTTCAGGAAGTGCTAAAGAAAAGGCTACGGTAATTCCTATTGTTCTGAGTATGGCTTTTCTGATTGGGCTGCTGTGTCTGTTGTTATATTATAATGTTCATAGAAGGAGAGCTATGAAGAGAGCCATGGAGAGCTCTCTCATCTTGTCTGGTGCTCCCATGAGTTTTACGCACCGTGATTTGCAGGTCCGGACAAACAATTTTTCTGAGGTTCTTGGAACAGGGGGATTTGGAAGTGTATATAAAGGAAGCCTTGGAGATGGGACTCTGGTAGCTGTGAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAGTTTATAACTGAAGTTAACACAATTGGATCTATGCATCACATGAATTTGGTTCGGCTCTGCGGATACTGCTCAGAAGGATCGCATAGGCTACTAGTTTATGAGTTTATGAAAAATGGGTCATTGGACAAGTGGATATTTCCAACACATCATAATCAAGACAGAATTTTAGATTGGTCGACTCGGTTTCATGTAGCCGTTGGCACGGCTCAAGGGATTGCTTATTTCCATGAGCAATGCAGGAATAGGATCATACACTGTGATATCAAACCAGAAAACATTCTGTTGGATGAAAACTTTTGTCCCAAAGTTTCAGACTTTGGTCTGGCTAAGCTGATGGGAAGAGAGCACTCACATGTTGTAACAATGGTGAGAGGGACAAGAGGGTATTTGGCTCCAGAGTGGGTCAGTAATCGCCCCATCACTGTTAAAGCTGATGTTTATAGCTATGGGATGCTTCTCTTGGAGATTGTTGGTGGCAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGAGGAATGGGACTCATTTCAAAGTTGCAGACCGGCGACTAGAAGGTGCAGTGGAGGAAGGAGAGCTTATGAGAGCATTGAAAGTGGCATTTTGGTGCATTCAAGATGAAGTTGTCACAAGACCGACGATGGGCGACATTGTGAGGATGTTGGAAGGATCGATGGACGTCGACATGCCACCAATGCCACAAACAGTGTTGGAGCTGGTTGAGGAAGGCTTGGATCAAGTGTATAGAGCCATGAAAAGAGACATTAATCAGTCAAAAGTAGGATTCTGCTCTATTTCTAGAGCCAGTGTTGATTTTTTCTTTTCTCTCTCTTTCTCGTTCGTCCTGCGTATGAACATCTTAAATCTAAGGCATTCTGATTCGCTTGGGTTCGATTATGTTCAATTCTTCAGTAATTCATGGAGTAATATTTGTGAGGAACTTGGGCTTAAGTGTATTAGTGACTAG 2796 44.56 MAVGANSLFLALAIAWLIRACMAAPIGIRSKLLASNRNQMWLSDNGTFAFGFSPVSSSGGSVSDPFLLAIWFAKLPGDRTIIWSANSNKLQNSSALRLSDHVSFLSQSFTYRNSPVSKNAIVELDATGNLVLTDGGGGAVWSSNTSGDGAEFAVMSESGNFILFNAERSPVWQSFSHPSDTLLPNQPLSVSLELTTSKSPSHGGYYTLKMLQQRTTLKLALTFNLPENYEGLPESYANYSYWSAPEISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDKSKTNASCSCLPGTFKDNGGSQCFENSSSVGKCVGQNHQSPSTQYRISPVQQTNYYYSEFSVIANYSDINTVSKCGDACLTDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPEANGPGAERDSSGSAKEKATVIPIVLSMAFLIGLLCLLLYYNVHRRRAMKRAMESSLILSGAPMSFTHRDLQVRTNNFSEVLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPTHHNQDRILDWSTRFHVAVGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMRNGTHFKVADRRLEGAVEEGELMRALKVAFWCIQDEVVTRPTMGDIVRMLEGSMDVDMPPMPQTVLELVEEGLDQVYRAMKRDINQSKVGFCSISRASVDFFFSLSFSFVLRMNILNLRHSDSLGFDYVQFFSNSWSNICEELGLKCISD 931
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9233073 9240945 + ClCG05G008550.2 Cla05g00933 272423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00933 931 SUPERFAMILY Protein kinase-like (PK-like) 538 832 IPR011009 -
Cla05g00933 931 PANTHER OS07G0415500 PROTEIN 9 94 - -
Cla05g00933 931 PANTHER OS07G0415500 PROTEIN 111 870 - -
Cla05g00933 931 Pfam S-locus glycoprotein domain 294 368 IPR000858 GO:0048544
Cla05g00933 931 CDD STKc_IRAK 565 833 - -
Cla05g00933 931 Pfam Protein kinase domain 562 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00933 931 Gene3D Phosphorylase Kinase; domain 1 523 634 - -
Cla05g00933 931 SMART blect_4 32 178 IPR001480 -
Cla05g00933 931 SUPERFAMILY alpha-D-mannose-specific plant lectins 110 192 IPR036426 -
Cla05g00933 931 SMART serkin_6 559 831 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00933 931 Pfam D-mannose binding lectin 112 192 IPR001480 -
Cla05g00933 931 ProSiteProfiles Protein kinase domain profile. 559 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00933 931 ProSiteProfiles Bulb-type lectin domain profile. 33 176 IPR001480 -
Cla05g00933 931 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 9 94 - -
Cla05g00933 931 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 111 870 - -
Cla05g00933 931 CDD B_lectin 42 178 IPR001480 -
Cla05g00933 931 ProSitePatterns Protein kinases ATP-binding region signature. 565 588 IPR017441 GO:0005524
Cla05g00933 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Cla05g00933 931 PIRSF SRK 1 879 IPR024171 GO:0004674
Cla05g00933 931 Gene3D Transferase(Phosphotransferase) domain 1 635 847 - -
Cla05g00933 931 Gene3D - 32 177 IPR036426 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00933 - - - bhj:120087538 1670.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00933 Cla-Chr5:9233073 Cla08g00877 Cla-Chr8:21220494 3.09E-145 dispersed
Cla05g00933 Cla-Chr5:9233073 Cla08g01336 Cla-Chr8:26213653 2.33E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g816 . . . . . . . . . Cmo18g01317 . . . . . . . Bhi01g01427 . . . . . . . . . . . . . . . . . . . . Cme06g01057 . . . . . . . . . . . . Cma18g01288 . Car18g01206 . . . . . . . . . Cla05g00933 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80557 PF00069 Pkinase 4.00E-46 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00933 Cla_Chr05 FPKM 1.461999 1.742172 2.565341 2.268151 3.194874 3.273027 4.306481 3.812485 3.022582 3.957573