Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00934 ATGGAGAATATGCAGTATGCTGAGGAGCTCGTGAGGGAGTTCCTTGTCTTTAGGGGGTTTACAACTTCTCTTCAATCTTATGAGAGTGAGCTGAGCACAGATGTCGGAAAAGGGTTCCAAGTGGACAAGATTTTGGATTTAATCTTCTCAATTTATATACCCAAATTTGAGGCAGGAAAGTTGGTGGGGCTACTAGGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAATACACTTCTTTCAACCATGTCAAAATTGGAGGTTTCCATCCTTCGTTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTTAAACTAAATGGCAATGATCTACTGCAGAGGACTAAAGATTGGACTCCATGGTTTGCCATGCCGTACCTAAAGAATCCAAAGTTTGATCCCAACTTTCACGTTTATTTTACAAAGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGCGAAGCTTTATTGGAGGAAAAGGAGGCTCATCTTTGCCACTTGAGAAGCCTGGTGAACAGTTCTTCAAGTGTGATGCACGAAGAGAATGCTACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAACTCGCTCGAGATGGGGTTTTAGCTGGCTCTGACAAGTGTACTGCTTCAAATGAGGATTCAAGTTCTTTATTAACTATTTGCTCGGGAGACCGTGAAGTTGGTGATCCTAGTCATAGTTGTGAAGATGTTCGTCAAATGGTGAATAGCGGAGAAGTCCATGTACAAGAAGACTTCCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGATTCGTCCACTCCAGCATCTAGAAATGCAACAATTTACTGTGGGGCAGAGATTATGTCACTTGACTGGGAGTGTAAATCCGATCGCCTACTTCTAATAGGCACCGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACGACTGATATGTTCCCTAGCGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTCTCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAACATGAGAACTTGGAAGTCAATGACAGTCCTTCCTCTGGGTAAGGATCCACCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGACATGTCCGCTTGTCTACAAATTACAGGGTGGCCGGCACATGATTCTGCCATTAACTCGATTCTTTTCGGGCCGGATGAAACTAGCATTTTTACTTTAGGGTCAGATGGGAAGATATTTGAATGGAGCTTGCATAATCAAGGTCAAGTTCTGTGGTCAAGAAATAATAGCAGGTTTTGCGATTCTGAGAGCTCTCTGTCCTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAGTTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGCGGATTGAAAACTCTTCCACACACGGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCCGACCACTCAGTTCGAGTTACGTCTATTTCTTGA 1803 43.59 MENMQYAEELVREFLVFRGFTTSLQSYESELSTDVGKGFQVDKILDLIFSIYIPKFEAGKLVGLLGFFKQCLASSSDNTLLSTMSKLEVSILRYYMVHAIQSGRTDKVLEFLKLNGNDLLQRTKDWTPWFAMPYLKNPKFDPNFHVYFTKEWYEALHVSVRNFFSEALLEEKEAHLCHLRSLVNSSSSVMHEENATSSNDAQETCPPPTTQVGETQLARDGVLAGSDKCTASNEDSSSLLTICSGDREVGDPSHSCEDVRQMVNSGEVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFDMSACLQITGWPAHDSAINSILFGPDETSIFTLGSDGKIFEWSLHNQGQVLWSRNNSRFCDSESSLSLRHEMALDANGKRLLATSSSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSVRVTSIS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9240985 9247700 + ClCG05G008560.2 Cla05g00934 272424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00934 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 320 - -
Cla05g00934 600 SMART WD40_4 464 505 IPR001680 GO:0005515
Cla05g00934 600 SMART WD40_4 323 362 IPR001680 GO:0005515
Cla05g00934 600 SMART WD40_4 422 463 IPR001680 GO:0005515
Cla05g00934 600 SMART WD40_4 278 317 IPR001680 GO:0005515
Cla05g00934 600 SMART WD40_4 560 598 IPR001680 GO:0005515
Cla05g00934 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 506 IPR001680 GO:0005515
Cla05g00934 600 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 566 600 - -
Cla05g00934 600 MobiDBLite consensus disorder prediction 188 213 - -
Cla05g00934 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
Cla05g00934 600 Gene3D - 403 600 IPR015943 GO:0005515
Cla05g00934 600 PANTHER OS05G0299300 PROTEIN 1 599 - -
Cla05g00934 600 SUPERFAMILY WD40 repeat-like 276 596 IPR036322 GO:0005515
Cla05g00934 600 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 600 IPR001680 GO:0005515
Cla05g00934 600 Pfam WD domain, G-beta repeat 435 463 IPR001680 GO:0005515
Cla05g00934 600 Pfam WD domain, G-beta repeat 566 596 IPR001680 GO:0005515
Cla05g00934 600 Pfam WD domain, G-beta repeat 283 316 IPR001680 GO:0005515
Cla05g00934 600 Gene3D - 188 401 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00934 K24760 WDR91; WD repeat-containing protein 91 - bhj:120087923 1160.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00934 Cla-Chr5:9240985 Cla01g01766 Cla-Chr1:32581519 1.29E-13 dispersed
Cla05g00934 Cla-Chr5:9240985 Cla09g00656 Cla-Chr9:6239084 8.32E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00934 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.400554 0.0 0.0 0.0