Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00937 ATGGAGGCCATATGGAGTGTGTTCTGTGGAGGTTATGACTGTTCCAATGGTAGTGAGAAACCTTGTGGTTTTGACTATGACTTTCTTTCTCATTCCTCTCCATGTACAAGTCAAGCTCTGATCATCTGTTTTGATTTTCTACTGTTCATCTTGCTTGTATCCAATATTGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTAACGGTTCAGGTTTGCTGATTTTTTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTACCTTGGCTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGTTCTATTGTCAGCATATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCGGCATTCGTGTTTGCTGGGGTTGTTTGTGTTCTTTCACTTTTTGATGCCGTTTCGAGTAAAATAGTATCGGCAAAGATGGTTTTGGATGTTCTATCTGTTCTGGGATCAGTTTTATTATTGCTTTGCTCTTTTGGTTGTTTTAGCTGCCAAGAGAGTGAGGAGAGTATCAATGGGAATGGACTTTACACCCCATTAATTGATGAGGCCAATGAAAGTGGTAAGCTTGATCCTGTAACTCCATTAGCCAAAGCTGGATTGCTGAGTAAAATTTCGTTTTGGTGGATGAATCCTTTAATGAAAAGGGGGAAGAAGAAGACTCTCAACAGTGAAGATATACCGATGATGCGTGAGGAAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATGAACGAGCACAAAAGAAAAGACCAAAGTTCTCAATCATCAGTCTTCAGAGTCATTCTTTCATGCCATCGGAGGGATATATTATTGTCAGGATTTTTCGCTTTGTTGAAAATACTCTTTCTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATACGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTTTCAAAAAGCATTGAATCCATATCACAAAGACAATGGTATTTCAGAACCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCAGCCATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACCGTAGACGCGTATAGGATTGGAGAATTCTCATTCTGGTTCCACCAAACTTGGACCACAAGCGTTCAGCTTTGTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATAGCCTCCTTATTAGTGATAATTCTATGTGTAGTTGGGAATACTCCAATTGCCAAGCTACAACATAAGTATCAGAGTAAATTGATGGCGGCACAAGATGAGAGATTGAAGACGTTTACAGAGGCCCTTGTAAACATGAAAGTGTTGAAGTTATATGCGTGGGAAACTCATTTCAAGAATGTAATTGAGAAGTTAAGAAAGGAGGAGCAGAGGTGGCTGTCAGCCGTGCAATTTCGAAAGGGATACAATGGCATTCTCTTTTGGTCGTCTCCTGTTATCGTCTCTGTTGCAACCTTCGGGGCATGTAGTTTTTTGAACATTCCCCTACATGCCAATAATGTCTTCACTTTCGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGTGATGTCGTTGCGGTGATCATTCAAGCAAGGGTCTCATTTACACGTATTATTAACTTTCTGGAGGCACCTGAGCTGCAAACTTCAAGTGTTCCTAGAAAGTGTGTGAAGATGAATAACGACTGCTCCATTCGGATCCGTTCAGCATCTTTCTCGTGGGAAGAGAATTCGACAAGGCCTACTCTTCGTGATATAAATCTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCGTTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGATTGCTTATGTGTCTCAAACGGCATGGATCCAAACAGGGTCCATACGAGATAACATTTTATTTGGCTCTGAAATGGACAATTCGAGATATCGAGAAACACTCGAGAAGTGTTCATTGGTGAAGGACCTCGAGTTACTTCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTTGCTCGTGCGCTATATCAAAATGCCGACATATATCTTTTGGACGATCCATTTAGCGCTGTCGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCACTCTCGGGAAAAATGGTTCTTCTTGTGACTCATCAAGTCGATTTCCTGCCAGCTTTTGATTCTGTCCTGCTGATGTCTGATGGGGAAATTCTAAAAGCAGCTCCTTATGATCAGCTGTTGGCACATAGTAAAGAATTTCAGGAACTTGTCAATGCACACAAAGAGACTGCTGGAACTGAAAGGCTTGCAGATATATCTGCTACCAAGAGTTTGAGAACATCTAGTAAAGAAATTAAGAAATCTTTTACAGAGAAACTGTCTGTAGCTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTTTCTCCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTTCGAACGTCGATAATCCCAACATCAGCAACTCGCACTTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTTTTGGCTTCAAGATCTCTTTTAACAGCTGTTTTAGGTCTGCAATCATCAAAATCATTGTTTTCTCAGCTACTAACATCTCTTTTTCGTGCACCGATGTCCTTCTATGACTCCACGCCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCGTTTAGTTTGATATTTGCTGTGGGGGCAACCTCCAATGCCTATGCTGCTCTCGGAGTTTTAGCTGTAATCACGTGGCAAGTTCTATTCATCTCCATACCGACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGGACAACAAAGTCAATGGTAGCGAACCATTTGTCCGAATCCATAGCTGGAGCAATGACAATTCGAGCTTTTGAAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAGTTTGTTGATGGAAATGCTAGTCCTTTCTTTCACAACTTTTCAGCCAATGAGTGGCTGATACAGCGGTTAGAAATGCTCAGCGCGGTTGTCCTTGCCTCCGCTGCATTTTGCATAGTATTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTATGGCCTTTCTTTAAATGTGTCCCTGGTCTTCTCCATCCAGAATCAATGTAATATAGCCAATCACATTATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCTGAAATCATCGAAGCTAACCGTCCCCCGACCAACTGGCCCTCTATTGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCAAATACACCCCTTGTTCTTCATGGTATTAGCTGCACATTTGAAGGAGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGAGGAAAGATTTTAGTTGATGATATCGACATCTGCTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGTCTGTTCGATACAATTTGGATCCCTTAGTCCAGCATACCGATGATGAAATATGGGAGGTGGTGCTTTGTTCTTTAGAGGTACTCGGAAAGTGTCAACTTAGAGAGGTTGTCGAAGAGAGAGAGGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAGCGACAACTTTTCTGTTTAGGTCGTGCACTTTTGAGGAGAAGTCGAATATTAGTGCTTGACGAAGCAACTGCATCAATCGACAATGCCACCGATATGATTCTGCAGAAAACTATTCGATCTGAATTCGCAGACTGTACTGTAATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACGAACCGACCACATTGATCAAGAGAGAAGGCTCCCTATTTGGACAGTTAGTCAAAGAATACTGGTCTCACTCACCATCTGCAGGATTATTTTGA 4461 41.81 MEAIWSVFCGGYDCSNGSEKPCGFDYDFLSHSSPCTSQALIICFDFLLFILLVSNIVGKSMKRVHMSNRIRNGSGLLIFSAIFNGCVGLVYLGLGIWTLVEKLRKDHTALPLQLWLSASFHGFTWLLVSSIVSIWSKQLPRALLRLLSIAAFVFAGVVCVLSLFDAVSSKIVSAKMVLDVLSVLGSVLLLLCSFGCFSCQESEESINGNGLYTPLIDEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKRGKKKTLNSEDIPMMREEDRAESCYLQFINQMNEHKRKDQSSQSSVFRVILSCHRRDILLSGFFALLKILFLSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRTRLVGLKVRSLLSAAIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIATIASLLVIILCVVGNTPIAKLQHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEQRWLSAVQFRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVVAVIIQARVSFTRIINFLEAPELQTSSVPRKCVKMNNDCSIRIRSASFSWEENSTRPTLRDINLEVKPGSKVAICGEVGSGKSTLLAAVLGEIPNVEGNIQVYGRIAYVSQTAWIQTGSIRDNILFGSEMDNSRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKMVLLVTHQVDFLPAFDSVLLMSDGEILKAAPYDQLLAHSKEFQELVNAHKETAGTERLADISATKSLRTSSKEIKKSFTEKLSVASDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVFSQLAFVACGITQNSWMASNVDNPNISNSHLIIVYLLIGVTSTLFLASRSLLTAVLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNVSLVFSIQNQCNIANHIISVERLNQYMHLSSEAPEIIEANRPPTNWPSIGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGKILVDDIDICSIGLHDLRSRFGIIPQDPTLFKGSVRYNLDPLVQHTDDEIWEVVLCSLEVLGKCQLREVVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAGLF 1486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9276181 9284828 - ClCG05G008600.1 Cla05g00937 272427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00937 1486 Gene3D - 1217 1475 IPR027417 -
Cla05g00937 1486 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Cla05g00937 1486 SUPERFAMILY ABC transporter transmembrane region 921 1216 IPR036640 GO:0005524|GO:0016021
Cla05g00937 1486 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Cla05g00937 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g00937 1486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 69 1483 - -
Cla05g00937 1486 SUPERFAMILY ABC transporter transmembrane region 301 605 IPR036640 GO:0005524|GO:0016021
Cla05g00937 1486 Gene3D ABC transporter type 1, transmembrane domain 279 602 IPR036640 GO:0005524|GO:0016021
Cla05g00937 1486 Gene3D ABC transporter type 1, transmembrane domain 883 1214 IPR036640 GO:0005524|GO:0016021
Cla05g00937 1486 Gene3D - 603 869 IPR027417 -
Cla05g00937 1486 SMART AAA_5 651 824 IPR003593 -
Cla05g00937 1486 SMART AAA_5 1259 1458 IPR003593 -
Cla05g00937 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 954 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g00937 1486 CDD ABCC_MRP_domain1 624 824 - -
Cla05g00937 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 847 IPR027417 -
Cla05g00937 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 624 847 IPR003439 GO:0005524
Cla05g00937 1486 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Cla05g00937 1486 Pfam ABC transporter transmembrane region 923 1176 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g00937 1486 Pfam ABC transporter transmembrane region 309 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cla05g00937 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1233 1474 IPR003439 GO:0005524
Cla05g00937 1486 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Cla05g00937 1486 CDD ABCC_MRP_domain2 1231 1458 - -
Cla05g00937 1486 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 69 1483 - -
Cla05g00937 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1467 IPR027417 -
Cla05g00937 1486 Pfam ABC transporter 1250 1405 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00937 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - csv:101210136 2654.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00937 Cla-Chr5:9276181 Cla09g00053 Cla-Chr9:521298 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00937 Cla_Chr05 FPKM 3.581081 5.946424 21.233568 17.302282 0.0 1.019161 1.956125 0.0 0.0 0.0