Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00939 ATGATGAAGAATAGCTTCATTTTCCTTGAAATATTATTGTTTTTAGCATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTCGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCAGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTTGTAGTGAAGAGGCTGAATCAAGTGACGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTCGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCAACTCCCGTTCATGTAATGGAAATCGGTTCTTCCTCGCATTTACCTTGA 1899 43.02 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVTTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHVMEIGSSSHLP 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9311942 9314319 + ClCG05G008630.1 Cla05g00939 272429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00939 632 PANTHER LRR RECEPTOR-LIKE KINASE 17 623 - -
Cla05g00939 632 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Cla05g00939 632 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Cla05g00939 632 PANTHER OS05G0588300 PROTEIN 17 623 - -
Cla05g00939 632 Gene3D Phosphorylase Kinase; domain 1 292 402 - -
Cla05g00939 632 Pfam Protein tyrosine and serine/threonine kinase 331 595 IPR001245 GO:0004672|GO:0006468
Cla05g00939 632 Gene3D Transferase(Phosphotransferase) domain 1 403 617 - -
Cla05g00939 632 ProSiteProfiles Protein kinase domain profile. 327 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g00939 632 MobiDBLite consensus disorder prediction 599 619 - -
Cla05g00939 632 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Cla05g00939 632 SUPERFAMILY Protein kinase-like (PK-like) 331 596 IPR011009 -
Cla05g00939 632 SUPERFAMILY L domain-like 38 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00939 Cla-Chr5:9311942 Cla06g01042 Cla-Chr6:22563430 7.19E-180 dispersed
Cla09g00856 Cla-Chr9:8791242 Cla05g00939 Cla-Chr5:9311942 1.21E-68 transposed
Cla09g02057 Cla-Chr9:38159316 Cla05g00939 Cla-Chr5:9311942 3.08E-70 transposed
Cla01g00205 Cla-Chr1:2033852 Cla05g00939 Cla-Chr5:9311942 0 wgd
Cla01g00067 Cla-Chr1:554407 Cla05g00939 Cla-Chr5:9311942 0 wgd
Cla05g00939 Cla-Chr5:9311942 Cla07g01399 Cla-Chr7:31128770 4.50E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80558 PF07714 PK_Tyr_Ser-Thr 1.10E-34 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00939 - - csv:101207123 1149.42