Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00940 ATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCGCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGCTTTCTTATTTCCTCCACTCACGATTGGATTTGCAGGTGGCATTCAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCAATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCGCTCGTGCCTGAGATCGCTCATATGTACAAGACTGACAGGAACAAATATGAGACAACCGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA 483 46.79 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKLSYFLHSRLDLQVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9316029 9319673 + ClCG05G008640.2 Cla05g00940 272430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00940 160 CDD UBCc 3 154 IPR000608 -
Cla05g00940 160 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 86 101 IPR023313 -
Cla05g00940 160 Pfam Ubiquitin-conjugating enzyme 5 153 IPR000608 -
Cla05g00940 160 SUPERFAMILY UBC-like 2 159 IPR016135 -
Cla05g00940 160 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Cla05g00940 160 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Cla05g00940 160 SMART ubc_7 4 159 - -
Cla05g00940 160 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 159 IPR000608 -
Cla05g00940 160 PANTHER BNAA01G32320D PROTEIN 3 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00940 - - K06689 cit:102614401 305.449
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00205 Cla05g00940 CCT
Cla01g00205 Cla05g00940 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00940 Cla-Chr5:9316029 Cla01g00205 Cla-Chr1:2033852 6.08E-95 dispersed
Cla11g01764 Cla-Chr11:31262144 Cla05g00940 Cla-Chr5:9316029 3.40E-10 dispersed
Cla02g02325 Cla-Chr2:38350508 Cla05g00940 Cla-Chr5:9316029 1.03E-44 transposed
Cla07g00982 Cla-Chr7:26014326 Cla05g00940 Cla-Chr5:9316029 3.20E-42 transposed
Cla09g00979 Cla-Chr9:10285679 Cla05g00940 Cla-Chr5:9316029 5.82E-91 transposed
Cla01g00064 Cla-Chr1:542564 Cla05g00940 Cla-Chr5:9316029 1.80E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g857 Blo06g01071 Blo15g00101 Bda05g00107 . Bpe03g00169 . Bma10g01274 Bma14g01988 . Cmo18g01322 . . . . Sed01g3831 . . Bhi01g01436 Tan01g0162 Cmetu06g1241 . . Mch10g0101 . Cla01g00205 . . . . . . . . . . Lsi05g01167 Csa05g00072 . . . . . Bda15g00771 . Bpe12g00368 . . . . . . Cma18g01293 . . . . Bhi12g00607 . . . Hepe06g0766 . . Cla05g00940 Cam05g1029 Cec05g1032 Cco05g1028 Clacu05g1018 Cmu05g0971 Cre05g1050 . . . Cme09g01822
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000093 10 14 5 8 10 8 7 6 4 8 8 6 9 8 9 10 7 11 12 3 8 8 10 7 4 8 8 13 15 7 251
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00940 Cla_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0