Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00943 ATGGCCATCGCTGTGCTCGATGCCCTCGACAACGCTCGTACACAATGGTACCATATTACGGCTATAGTCATAGCCGGGATGGGATTCTTTACGGACGCCTATGATCTTTTTTGCATCTCGACCGTGTCGAAGCTTCTTGGTCGACTTTATTACTTTGATCCAGATAGTAGTAAGCCTGGAAAACTTCCGAACCCCGTCAACAACGCCGTCGTTGGAGTTGCGCTAGTCGGAACCCTAATGGGGCAGCTTTTCTTTGGGTGGTTGGGTGATAAACTTGGAAGGAAGAAAGTTTATGGTGTTACCCTTATTCTTATGGCCTTTTGTGCCATTTGCTCAGGGCTTTCTTTTGGGTCAACATCAAAATCAGTGATAGGTACACTTTGTTTCTTTAGATTTTGGCTTGGATTTGGCATTGGGGGCGACTACCCACTTTCAGCCACCATCATGTCGGAATATGCCAACAAAAAGACTCGAGGAGCTTTCATTGCGGCTGTCTTTGCCATGCAGGGTGTGGGGCTAATATTTGCAGGGCTAGTATCAATGATCCTATCAAAAATCTTCCTGACCCTTCATGATGCTCCCATTTACAAACACGACCCTGTATTTTCCACACAACCTCAAGGAGATTTCCTATGGAGAATTGTGCTAATGCTTGGTGCTTTACCAGCCATTTTAACTTACTATTGGAGAATGAAAATGCCTGAAACAGGACGTTACACTGCCCTTATTGAAGGCAATGCCAAACAAGCTGCTGCAGATATGGGAAAAGTTTTAGAGATCACAATTCAAGCTGAGCAAGACAAACTTGCCAATTTCAAATCAGCCAATGAATATGGTTTGTTGTCTAAAGAATTCTTTCATCGCCATGGACTCCATTTGATTGGAACTACCACTACTTGGTTCTTGTTGGACATTGCATTTTATAGCAATAACCTTACTCAAAAAGACATATTCCCAGCTATGAATTTGACCAAACAGCCGGATGCAGTTAATGCATTGGAAGAAGTTTATGAAACTTCTAAAGCTATGTTCCTTGTTGCCTTACTTGGAACTTTCCCTGGATATTGGTTCACTGTTTTCCTCATTGAGAAGCTTGGAAGGTTCAAAATCCAATTGATTGGATTCTTCATGATGTCAGTTTTCATGGCCGTCCTCGGCGTTCGTTACAATTACTTGAAGCACCATCCCGCCGAGTTCGCCGTGCTTTATGGCCTGACATTCTTCTTTGCCAACTTTGGTCCTAATAGCACCACCTTTGTCCTCCCTGCAGAGCTCTTCCCGACTAGGGTCCGATCGACATGTCATGCGCTAAGTGCTGCATCCGGGAAGGCCGGTGCGATCGTTGGAGCTTTCGGGGTGCAAAATTATACACTAGATGGAAACCCTAGTAAGATTCAAAAGGCTATGATTTTCTTGGCCTTCACTAACATGCTAGGGTTTGTGTTTACATTCTTGGTGACGGAGACTAAAGGGCGGTCGTTGGAGGAGATCTCCGGCGAGGACGGGCGCGCAGGTGATAATGAAAGTCAAATGCCAGTTAGATCGATGGGAAAGCCAGGAGGTCAAATGGAAGAATAA 1578 44.8 MAIAVLDALDNARTQWYHITAIVIAGMGFFTDAYDLFCISTVSKLLGRLYYFDPDSSKPGKLPNPVNNAVVGVALVGTLMGQLFFGWLGDKLGRKKVYGVTLILMAFCAICSGLSFGSTSKSVIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGLIFAGLVSMILSKIFLTLHDAPIYKHDPVFSTQPQGDFLWRIVLMLGALPAILTYYWRMKMPETGRYTALIEGNAKQAAADMGKVLEITIQAEQDKLANFKSANEYGLLSKEFFHRHGLHLIGTTTTWFLLDIAFYSNNLTQKDIFPAMNLTKQPDAVNALEEVYETSKAMFLVALLGTFPGYWFTVFLIEKLGRFKIQLIGFFMMSVFMAVLGVRYNYLKHHPAEFAVLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHALSAASGKAGAIVGAFGVQNYTLDGNPSKIQKAMIFLAFTNMLGFVFTFLVTETKGRSLEEISGEDGRAGDNESQMPVRSMGKPGGQMEE 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9365619 9367918 - ClCG05G008670.1 Cla05g00943 272433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00943 525 Pfam Sugar (and other) transporter 22 498 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cla05g00943 525 Gene3D MFS general substrate transporter like domains 17 514 IPR036259 -
Cla05g00943 525 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 3 508 - -
Cla05g00943 525 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 491 IPR020846 GO:0022857
Cla05g00943 525 SUPERFAMILY MFS general substrate transporter 9 498 IPR036259 -
Cla05g00943 525 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 3 508 - -
Cla05g00943 525 MobiDBLite consensus disorder prediction 496 525 - -
Cla05g00943 525 CDD MFS_PhT 22 490 - -
Cla05g00943 525 TIGRFAM 2A0109: phosphate:H+ symporter 6 500 IPR004738 GO:0005315|GO:0006817|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00943 Cla-Chr5:9365619 Cla06g00662 Cla-Chr6:8381823 0 dispersed
Cla05g00943 Cla-Chr5:9365619 Cla05g00448 Cla-Chr5:3994632 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00943 K08176 - csv:101210631 948.732