Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00952 ATGGGACTCCCAAGGCAACTTTCCGGTGACCGGAAGTCCGTACAAGGTTCCAATTTTGACAATACTGAAGAAGCCAATTACAGTTCATGGCTGAAAAAACATCCTTGTGGTTTGGAATCGTTTGAGAGGATAATGAAAGGGCTAAAAAGGAAGAAGATTGTTGTGTTCTTGGATTATGATGGAACCCTTTCTCCCATTGTTGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGCAGCTGTGAGAGAAGTGGCAAAATGCTTTCCAACAGCAATAATAAGTGGAAGAAGCCGAGATAAAGTAAAAGAGTTCGTGAAATTGAGTAATGTCCATTATGCTGGGAGCCATGGAATGGACATTATGGCTCCAACATCCAACAATGAGGTTCTTGTCGTCGATGCGGTTCCTTTTCAACCAGCCAAGAAGTTTCTACCAGCAATTCAACAAATTAGGCAAATATTAGAGGAAGAAACTAGAAAAATCGAAGGTGCAATGGTGGAGGATAATAGATTTTGTGTTTCTGTGCACTTTCGACATGTCCACGAAAGGGATTTGGAAAAATTGGAAAAGAAGGTAGAGACTATTATTGAAAAATATCCAGATTTTCATATAACTCCGGGCAAAATGGTTATGGAAATAAGACCGACAATAGATTGGAACAAAGGACATGCAATGGAATATTATCTACACACTCTCGGACATACTAACGTTGAGGATGTGATTCCTCTATACATTGGAGATGATCGAACGGATGAAGATGCTTTCAAGGTAATACAAATGAGGGGACAAGGGATTGCAATACTTGTATCATCCATTCCAAAGCACACAAAAGCGTCTTACTCTTTGAAGGATCCATCACAAGTTCTTGCTTTTTTGTTAAGGCTAGCAAGATGGAGGAAGTGCTCATCTTCTTCAATTACAAACCCACTTCCTCAAATTTAG 948 39.98 MGLPRQLSGDRKSVQGSNFDNTEEANYSSWLKKHPCGLESFERIMKGLKRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMRAAVREVAKCFPTAIISGRSRDKVKEFVKLSNVHYAGSHGMDIMAPTSNNEVLVVDAVPFQPAKKFLPAIQQIRQILEEETRKIEGAMVEDNRFCVSVHFRHVHERDLEKLEKKVETIIEKYPDFHITPGKMVMEIRPTIDWNKGHAMEYYLHTLGHTNVEDVIPLYIGDDRTDEDAFKVIQMRGQGIAILVSSIPKHTKASYSLKDPSQVLAFLLRLARWRKCSSSSITNPLPQI 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9483674 9486778 - ClCG05G008760.2 Cla05g00952 272442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00952 315 Pfam Trehalose-phosphatase 56 288 IPR003337 GO:0003824|GO:0005992
Cla05g00952 315 MobiDBLite consensus disorder prediction 1 20 - -
Cla05g00952 315 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 55 263 IPR006379 -
Cla05g00952 315 Coils Coil 180 200 - -
Cla05g00952 315 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 309 - -
Cla05g00952 315 TIGRFAM T6PP: trehalose-phosphatase 51 298 IPR003337 GO:0003824|GO:0005992
Cla05g00952 315 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 309 IPR044651 GO:0004805|GO:0005992
Cla05g00952 315 SUPERFAMILY HAD-like 54 300 IPR036412 -
Cla05g00952 315 CDD HAD_TPP 54 292 - -
Cla05g00952 315 Coils Coil 149 169 - -
Cla05g00952 315 Gene3D - 53 141 IPR023214 -
Cla05g00952 315 Gene3D - 142 309 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00952 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101204169 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01848 Cla-Chr1:33348979 Cla05g00952 Cla-Chr5:9483674 5.42E-108 dispersed
Cla05g00952 Cla-Chr5:9483674 Cla08g01098 Cla-Chr8:23773330 1.22E-101 dispersed
Cla05g00952 Cla-Chr5:9483674 Cla07g00908 Cla-Chr7:25044570 5.25E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00952 Cla_Chr05 FPKM 32.477142 36.366676 27.469267 30.290041 21.02829 20.154243 22.653692 32.615524 34.62112 37.313183