Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00953 ATGAATTACTTGAAGATGAAGCACCTAAATTACGGAGTGGGCAGGTACACTTGTTATGCCTTGATCCTTTGCATATCCCACATCGAACTTTCGTGCATGCCTTCTTTCCAACAATGTCGACAAACGACGGACAATGGACAGCAAAAAAACGTGCACGATGATTGGAGAATAAAGAAACGAAGAGATTTCCAACAGAGAAAGAGGAAATGGGCAGCGGCGACGGCTGAGAGAAAGGAGAGAAATGAGAGTGAAATGAGAGAAGAGAGAATGGTTTCGGAAGAAGAAGTGGCCGGCGGGATTAAAAGGGGAGGGACTCGTGGACCCCGTCCACAAGTTCGGTCAAACTGCATGCTGCATGTAGAGGCTGACGGGGTGACGGGGTGGGCTGGTAGGGTAATCGTGTACCCGGTACACGATTTCAGTGGCAATCGTGGACTGGGTCCACGATTCCACAACCCCAATTTTGTGGACGCAAGCGAGGCTCCATGTTGCCACCTGGCTTCTCCTCTTCGGTGCCAATGCTTCGTAAAGCCACCATTTTCTCTCTCTTTCCTCATATTTCTCTCTCCCTCTCTCTTGTTTATCTCCTTTTTCTTTTCCTCTGGTACTCTATTCTGTCCCGATTCTTCCATTTTCTACCCTGACTGTTGGCTTAGATGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACAAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTCGATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCACGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCAGAGGCAGCTGCTCGGAAGCTAACTGAAGCAGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATTGTGATTCTTTTTCTAGAGAGAGCGAGGGAGAGAGAGAGAGAAGAAAGACAAACTTGGATATTGGCTGTTAATTCTACACCTGCAGCAAATGGGTGTGCATAA 1668 46.34 MNYLKMKHLNYGVGRYTCYALILCISHIELSCMPSFQQCRQTTDNGQQKNVHDDWRIKKRRDFQQRKRKWAAATAERKERNESEMREERMVSEEEVAGGIKRGGTRGPRPQVRSNCMLHVEADGVTGWAGRVIVYPVHDFSGNRGLGPRFHNPNFVDASEAPCCHLASPLRCQCFVKPPFSLSFLIFLSPSLLFISFFFSSGTLFCPDSSIFYPDCWLRCLPSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVILFLERAREREREERQTWILAVNSTPAANGCA 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9494823 9507335 - ClCG05G008770.2 Cla05g00953 272443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00953 555 Gene3D - 272 535 IPR036457 -
Cla05g00953 555 PANTHER ALPHABET, ISOFORM E-RELATED 232 535 - -
Cla05g00953 555 MobiDBLite consensus disorder prediction 66 110 - -
Cla05g00953 555 SMART PP2C_SIG_2 278 526 IPR001932 -
Cla05g00953 555 ProSiteProfiles PPM-type phosphatase domain profile. 280 526 IPR001932 -
Cla05g00953 555 MobiDBLite consensus disorder prediction 250 269 - -
Cla05g00953 555 MobiDBLite consensus disorder prediction 67 100 - -
Cla05g00953 555 Coils Coil 75 95 - -
Cla05g00953 555 SMART PP2C_4 270 524 IPR001932 -
Cla05g00953 555 MobiDBLite consensus disorder prediction 251 269 - -
Cla05g00953 555 ProSitePatterns PPM-type phosphatase domain signature. 311 319 IPR000222 GO:0043169
Cla05g00953 555 SUPERFAMILY PP2C-like 276 526 IPR036457 -
Cla05g00953 555 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 232 535 - -
Cla05g00953 555 Pfam Protein phosphatase 2C 284 519 IPR001932 -
Cla05g00953 555 CDD PP2Cc 282 526 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00953 Cla-Chr5:9494823 Cla05g01655 Cla-Chr5:28135087 2.50E-114 dispersed
Cla08g01003 Cla-Chr8:22775029 Cla05g00953 Cla-Chr5:9494823 1.38E-40 dispersed
Cla05g00953 Cla-Chr5:9494823 Cla07g00237 Cla-Chr7:2622852 5.00E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00953 K17506 - csv:101203681 612.838