Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00957 ATGGAGGACGTCACAGGAAGAAGTTTGGAATGCCAGAAGATTATGGATGGGAAGGCGACTAGTGGGAATGGTTTAGAGAAGCCCATTCCTTCTTGTTGCTTGAAGGCTAAGACTTCAGACCCCGAGCTTGAGACTCAATGCCATTCAACCGTTGTTTCTGGCTGGTTTTCAGAATTTCAGTCTGGCTCTGATAAAGCCTGCAAGAAACTTTATTTCAACAACCCAATGTGGCCCGGAGAAGCACATGCTCTGCAAGTAGAGAATATACTATTTAAAGGAAAGTCGGAGTACCAGGAAGTTATGGTTTTTGAGTCTGCATCATATGGGAAAGTCCTTGTTCTCGATGGCATTGTTCAACTGACAGAGAAAGATGAATGTGCCTACCAAGAAATGATAGCACATCTTCCTCTTTGTTCAATCCCATCTCCTAAATCCGTTCTGGTGGTTGGCGGAGGTGATGGGGGAGTTCTGAGGGAAATTTCCCGCCATGACTCAGTAGAGCATATTGACATTTGTGAGATAGATAAGATGGTCATTGATGTATCAAAAGAGTTTTTTCCCCAACTGGCTGTTGGATTTGAGGACCCCCGTGTCCACCTTCACGTTGGTGATGCTGTTGAATTCCTTCGGAATGCGAAACAAGGGAGATATGATGCCATCATTGTTGATTCATCTGATCCTGTTGCCGAAATGCCTGGTAATATAGGTCCTGCACAAGAGCTGGTGGAGATGCCATTTTTTCGGACGATAGCCCGAGCATTACGACCTGGTGGTGTTCTCTGTAATATGGCTGAAAGTATGTGGCTGCATACACATCTTATTCAGGACATGATATCGATTTGTCGCCAAACATTCAAGGATGTTCGCTATGCATGGACCAGTGTTCCAACATATCCAAGTGGTGTCATAGGGTTTCTTCTCTGCTCAACTGAAGGGCCAACAGTTGATTTCAGGAATCCTGTGAATCCCATTGAGAAGTTGGGACATCTCAAGTCGAAAAGAGAACTCAAATTCTACAATTCTGAGATGCACTCGGCTGCTTTTGCACTGCCGTCGTTTCTCAAAAGGGAGGTGAAGGCGCTTAGCGACGCCTCAACTTCAGGTGAAAATGGATGCGTTTCGTCCCAAGTAGCCATTGTTTGA 1143 45.23 MEDVTGRSLECQKIMDGKATSGNGLEKPIPSCCLKAKTSDPELETQCHSTVVSGWFSEFQSGSDKACKKLYFNNPMWPGEAHALQVENILFKGKSEYQEVMVFESASYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKSVLVVGGGDGGVLREISRHDSVEHIDICEIDKMVIDVSKEFFPQLAVGFEDPRVHLHVGDAVEFLRNAKQGRYDAIIVDSSDPVAEMPGNIGPAQELVEMPFFRTIARALRPGGVLCNMAESMWLHTHLIQDMISICRQTFKDVRYAWTSVPTYPSGVIGFLLCSTEGPTVDFRNPVNPIEKLGHLKSKRELKFYNSEMHSAAFALPSFLKREVKALSDASTSGENGCVSSQVAIV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9562166 9565698 - ClCG05G008810.1 Cla05g00957 272447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00957 380 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Cla05g00957 380 TIGRFAM speE: spermidine synthase 79 353 IPR001045 GO:0003824
Cla05g00957 380 CDD AdoMet_MTases 167 260 - -
Cla05g00957 380 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Cla05g00957 380 Hamap Polyamine aminopropyltransferase [speE]. 54 359 IPR001045 GO:0003824
Cla05g00957 380 Pfam Spermine/spermidine synthase domain 125 318 - -
Cla05g00957 380 PIRSF Spermidine_synth 42 363 IPR030668 GO:0006595
Cla05g00957 380 PANTHER SPERMINE SYNTHASE 1 367 - -
Cla05g00957 380 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 367 IPR001045 GO:0003824
Cla05g00957 380 Gene3D Vaccinia Virus protein VP39 120 362 IPR029063 -
Cla05g00957 380 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 358 IPR029063 -
Cla05g00957 380 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Cla05g00957 380 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 310 IPR030374 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00957 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101212743 690.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00051 Cla05g00957 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01286 Cla-Chr1:26130950 Cla05g00957 Cla-Chr5:9562166 3.00E-101 dispersed
Cla05g00957 Cla-Chr5:9562166 Cla05g02529 Cla-Chr5:36677413 3.13E-160 dispersed
Cla01g00051 Cla-Chr1:410613 Cla05g00957 Cla-Chr5:9562166 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g882 . Blo15g00090 . . . Bpe07g01011 . . . Cmo18g01338 Cma02g01110 . . . Sed05g0421 Cpe05g00606 . Bhi01g01471 Tan01g0127 Cmetu09g1394 Lac11g0146 Hepe07g0078 Mch10g0078 . Cla01g00051 Cam01g0048 Cec01g0048 Cco01g0050 Clacu01g0051 Cmu01g0048 Cre09g2459 Cone1ag0965 . Cone14ag0022 Cone15ag0025 . Csa05g00058 Chy09g01431 Cme06g01114 . . Bda06g00781 . . . . Bma12g01194 . Cmo02g01138 . . Cma18g01308 . Car18g01222 Cpe09g00034 . Bhi12g00627 . . . . . Lcy12g0124 Cla05g00957 Cam05g1048 Cec05g1053 Cco05g1047 Clacu05g1041 Cmu05g0991 Cre05g1068 Lsi09g00028 . Chy06g01236 Cme09g01974
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002366 1 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 2 5 5 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00957 Cla_Chr05 FPKM 138.23732 160.631531 212.912872 223.820251 91.781364 77.46064 84.684204 130.79454 119.503624 124.866379