Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00958 ATGTGGTCCCCGCTACCCCTAGGTGGCCTCCATCCAAACACACTCATAAATCCAACGGCTCATATTCATTCTTCTTTTAAACTATCATTGAACTGCCACTTCAATCCTTTCTCATCATTTCCTTTCTTTTTCTCCCTCTTTTTCGTGCATTCACTGAACAAGCTGCAGCTCAGTAATAGCAGCCGGAACTTCCTCCGACGGCCGGTCGCTGGAATGTGCGATCCCACTACCATGATTAAAACCAAAAATGCTCGCCGGAGACGGCTGAGAGTTCGTAAACTGAGGTACAGATGGCAGAGGATGGTGCACGCGGCGGAGGAAGGTGAGGGCAATGAATTAAGTGATAATGGAGTTTCCAAATCGAATTGTGATCAAGTACTAGTCTCTGAGAAGGAATCGTCTTCGGCGTTGGACTGTCGAGTGTATAGCGAGATGTCGATTATAGGGCGGAGGAAGGAGATGGAAGATGAAGTGAGAGTGGAATTGGGATTGACGACGATTAATGATGAGAAGTACAATTTCTTCGCCGTGTACGATGGACACGGCGGCGCTCAGGTGGCGCAGGTGTGCCGTGAACGGTTGCACCGGATTGTGGCGGAGGAGATTGTGGCTCGGGGAGAGATGGATGAGGCGGAGTGGGGGAGGTTGATGGAGAGGTGCTTTGAGAGAATGGACGACGAAGTGAATAGCGGCGCCGCCACGATGAAGACGATCGGATCGGCGGTTGTTACGGCGGTGATCGGAAAGGAAGAGGTGGTGGTGGCCAATTGCGGCGATTGTCGAGCCGTTTTGGCTAGGGATGGTATTGCGTTGCCCTTGTCTAACGATCATAAGCCTGGTAGAGCTGATGAGTTGAAGAGAATTGAATCTGCCGGTGGAAGGGTCATAAATTGGAATGGCTACCGGGTGCTAGGAGTTCTTGCCACTTCAAGATCCATCGGTGATGAATATCTCAAACCATTTGTTATCTCCAAACCAGAAGTGACTGTGACCAAGCGAACTGACAACGATGAGTTCCTCATATTAGGAAGTGATGGTCTGTGGGACGTTGTTTCGAATGAAATTGCCTGCAACATAGTGAGGAGATGTTTTGGAGGCAAAATGAAGAGGATTTCGTTGAAGGTGGCGAACGACAGCCATGTCGCAGAAGCTGCAGCAGTGTTGGCGGAGCTCGCTGTGGCTCGTGGAAGCAAGGACAACATCAGTCATTACCGGAATCCAACGATTTCGTGGTTTCGTGTAGACTTTTTCAACTCGACTCTACTACAAGCTCCCTGTGGATTCATTTTGACTGTGGATAGAGCGCCGCGACGCTGTCATGCGTTCACCAAGGATGCGTCGAGGCAGCGCCATCTCGGCGCCGCGATGCTACTCTGCGTCCATGCTGATGCGTTTATACTTCAGCGTCGCGATGCGTTCAACAAGGATGTGTTTATGCTTCAGCGCCGCGGCAACGCCGTCTCAGCGCCGCATCGCTACCCCAAAATTTGTTCTTTTGAGTTTTTCAGCTCTTTTTCGCTGTATTCTTGCTCGGTTTTGATCTTTTAG 1548 50.39 MWSPLPLGGLHPNTLINPTAHIHSSFKLSLNCHFNPFSSFPFFFSLFFVHSLNKLQLSNSSRNFLRRPVAGMCDPTTMIKTKNARRRRLRVRKLRYRWQRMVHAAEEGEGNELSDNGVSKSNCDQVLVSEKESSSALDCRVYSEMSIIGRRKEMEDEVRVELGLTTINDEKYNFFAVYDGHGGAQVAQVCRERLHRIVAEEIVARGEMDEAEWGRLMERCFERMDDEVNSGAATMKTIGSAVVTAVIGKEEVVVANCGDCRAVLARDGIALPLSNDHKPGRADELKRIESAGGRVINWNGYRVLGVLATSRSIGDEYLKPFVISKPEVTVTKRTDNDEFLILGSDGLWDVVSNEIACNIVRRCFGGKMKRISLKVANDSHVAEAAAVLAELAVARGSKDNISHYRNPTISWFRVDFFNSTLLQAPCGFILTVDRAPRRCHAFTKDASRQRHLGAAMLLCVHADAFILQRRDAFNKDVFMLQRRGNAVSAPHRYPKICSFEFFSSFSLYSCSVLIF 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9583656 9588707 - ClCG05G008820.2 Cla05g00958 272448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00958 515 ProSitePatterns PPM-type phosphatase domain signature. 174 182 IPR000222 GO:0043169
Cla05g00958 515 SUPERFAMILY PP2C-like 133 402 IPR036457 -
Cla05g00958 515 Gene3D - 136 404 IPR036457 -
Cla05g00958 515 SMART PP2C_4 126 405 IPR001932 -
Cla05g00958 515 PANTHER ALPHABET, ISOFORM E-RELATED 83 402 - -
Cla05g00958 515 PANTHER PROTEIN PHOSPHATASE 2C 51-RELATED 83 402 - -
Cla05g00958 515 Pfam Protein phosphatase 2C 143 401 IPR001932 -
Cla05g00958 515 ProSiteProfiles PPM-type phosphatase domain profile. 141 408 IPR001932 -
Cla05g00958 515 CDD PP2Cc 140 402 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00958 Cla-Chr5:9583656 Cla08g01003 Cla-Chr8:22775029 1.32E-64 dispersed
Cla09g00016 Cla-Chr9:194518 Cla05g00958 Cla-Chr5:9583656 1.67E-30 dispersed
Cla05g00958 Cla-Chr5:9583656 Cla03g00118 Cla-Chr3:1202141 1.58E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00958 K14497 - csv:101214188 570.852