Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00963 ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAGCACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA 1575 43.87 MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWESTGQENGHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEVRNPSTINILNAAANLCCSDLWLYDTSKFKDAWF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9647626 9657511 + ClCG05G008860.2 Cla05g00963 272453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00963 524 Coils Coil 352 379 - -
Cla05g00963 524 Pfam SF3a60/Prp9 C-terminal 389 490 IPR024598 GO:0000398|GO:0003723|GO:0005681
Cla05g00963 524 PANTHER BNAA03G01920D PROTEIN 1 490 - -
Cla05g00963 524 MobiDBLite consensus disorder prediction 362 381 - -
Cla05g00963 524 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 126 174 IPR031774 -
Cla05g00963 524 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Cla05g00963 524 PANTHER SPLICING FACTOR SF3A-RELATED 1 490 - -
Cla05g00963 524 Pfam Replication stress response SDE2 C-terminal 223 303 - -
Cla05g00963 524 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00963 Cla-Chr5:9647626 Cla06g00109 Cla-Chr6:1171882 2.24E-10 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00963 K12827 - csv:101205916 911.753