Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla05g00963 | ATGTCGTCTACGCTGCTAGAGGTGACCCGCGCCTCACACGAGGAGGTGGAGCGACTCGAGCGGCTTATAGTGAAGGAGCTTCAAAATGAACCTGCTTCCGGCAAGGACCGTTTGCTACAGAGTCACCGAGTCCGCAATATGATTGACACCATCATGTCCACCACCGACAAACTCGTTGATGTTTATGAAGATAAGGATAGCGCCAGGAAAGATGAGATTGCGGCACTTGGAGGGCAAACAACTTCAGGAACCAACGTTTTTAGTGCATTTTATGATAGACTGAAGGAGATTCGTGAATACCATAGAAGGCATCCAGCTGCACGTGTTGTTGATGTTAATGAGGATGACGGCCTGCTGAAAGAGGAGCCACAAATTGAGTTCAGTGGAGAGGAAGCATTTGGACGGTATCTTGACTTGCACGAACTATACAACCAATATATTAATTCAAAATTTGGAGAGGCCATAGAGTACTCTTCATACCTGGATGTTTTTTCACAACCCCAGAAAATCTCTCGGAAACTAAAGGTTTCAAGACAATACAGGGAATACTTGGAGAATCTTCTTGCTTATCTCATTTATTTTTTCCAGCGTACAGAGCCCTTGCAAGATCTTGATCGGATATTCTCAAAGGTTGAATCTGAATTTGAAGAGCGTTGGACTATTGGTTCAATTGAAGGATGGGAGAGCACTGGTCAAGAAAATGGTCATGATTCCGGTCCGCATAGTCTTATTGATCTTGACTATTATAGCACAGTGGAAGAGCTGGTAGAACTAGGTCCTGAAAGGTTAAAGGAGGGGTTGGCGGCATTGGGACTGAAGACTGGTGGTACAGTTCAGCAGCGTGCAGAGAGGCTTTTCCTCACTAAGAATACGCCTCTTCAATTGTTGGACAAAAAACATTTTGCGAAACTGTCTCGGCAACCTATTCAAAATGGGGCAGCTGCGGCATCACAAAACAATGAAAACTTGAAACAAGTTGCCCTGATGGAGGCAAAAATTGAAAAATTGTGTGATCTTCTGGATGAGACAATCGCTCGAACCAAAGACAACATTGTTAAGAAGCAGGCATTAACATATGAGGAAATTGAAGCAGAACGTGAGGAGGAGGAGACACAAGCTGAGTCTGAAAGTGATGATGAAGAGCAACAGATCTATAATCCACTCAAGCTCCCAATGGGTTGGGATGGGAAACCCATACCTTACTGGCTCTACAAGCTTCATGGCCTTGGTCAGGAATTTAAATGTGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCTTTTGAGCGACATTTCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGTATTCCAAATACAAAGAACTTTAACGAAATCACATCAATTGAGGAGGCAAAAGACTTGTGGAAAAGAATACAAGAACGACAAGGAGTTAACAAGTGGCGACCAGACCTGGAAGAAGAATACGAAGATAAGGAGGTTCGCAATCCTTCTACTATCAACATCCTCAATGCCGCTGCTAATTTGTGCTGTTCTGACCTGTGGCTGTATGACACTTCAAAATTCAAGGATGCATGGTTTTAA | 1575 | 43.87 | MSSTLLEVTRASHEEVERLERLIVKELQNEPASGKDRLLQSHRVRNMIDTIMSTTDKLVDVYEDKDSARKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVNEDDGLLKEEPQIEFSGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISRKLKVSRQYREYLENLLAYLIYFFQRTEPLQDLDRIFSKVESEFEERWTIGSIEGWESTGQENGHDSGPHSLIDLDYYSTVEELVELGPERLKEGLAALGLKTGGTVQQRAERLFLTKNTPLQLLDKKHFAKLSRQPIQNGAAAASQNNENLKQVALMEAKIEKLCDLLDETIARTKDNIVKKQALTYEEIEAEREEEETQAESESDDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKRIQERQGVNKWRPDLEEEYEDKEVRNPSTINILNAAANLCCSDLWLYDTSKFKDAWF | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9647626 | 9657511 | + | ClCG05G008860.2 | Cla05g00963 | 272453 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla05g00963 | 524 | Coils | Coil | 352 | 379 | - | - | |
Cla05g00963 | 524 | Pfam | SF3a60/Prp9 C-terminal | 389 | 490 | IPR024598 | GO:0000398|GO:0003723|GO:0005681 | |
Cla05g00963 | 524 | PANTHER | BNAA03G01920D PROTEIN | 1 | 490 | - | - | |
Cla05g00963 | 524 | MobiDBLite | consensus disorder prediction | 362 | 381 | - | - | |
Cla05g00963 | 524 | Pfam | Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 | 126 | 174 | IPR031774 | - | |
Cla05g00963 | 524 | Pfam | Splicing factor SF3a60 binding domain | 80 | 105 | IPR021966 | - | |
Cla05g00963 | 524 | PANTHER | SPLICING FACTOR SF3A-RELATED | 1 | 490 | - | - | |
Cla05g00963 | 524 | Pfam | Replication stress response SDE2 C-terminal | 223 | 303 | - | - | |
Cla05g00963 | 524 | ProSiteProfiles | Zinc finger matrin-type profile. | 413 | 444 | IPR000690 | GO:0003676|GO:0005634|GO:0008270 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla05g00963 | Cla-Chr5:9647626 | Cla06g00109 | Cla-Chr6:1171882 | 2.24E-10 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla05g00963 | K12827 | - | csv:101205916 | 911.753 |