Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00966 ATGGGCTACGGCAGGCTCCACAAAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCAACCCCTTTCATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCCTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACTCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGCTCCGCTTACGATGCTTGTCTCGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCTTCCTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGAGGATAATTCCGGTAAATTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAGAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCAAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTTATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATTTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTAGCATCGTCTAACGGCACAAACCCGACGTATCTTGGCCGTCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCGACATTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGGGGGGCGGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTGGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTACGGCTCCTCATGGTTGCCGTCCACCGGAGTTGCATTCCTCGGAGGGCTAAATGTGTAA 1815 53.0 MGYGRLHKTDPGGTSSSAAAFQLPDQPLSFTPPNPRRTRLFLISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGHDEDNSGKFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9738714 9741609 + ClCG05G008910.1 Cla05g00966 272456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00966 604 SMART PMEI_2 79 235 IPR006501 GO:0004857
Cla05g00966 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Cla05g00966 604 PANTHER PECTINESTERASE 30 602 - -
Cla05g00966 604 Pfam Plant invertase/pectin methylesterase inhibitor 83 235 IPR006501 GO:0004857
Cla05g00966 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 237 IPR035513 -
Cla05g00966 604 CDD PMEI-like_3 87 237 - -
Cla05g00966 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599|GO:0042545
Cla05g00966 604 SUPERFAMILY Pectin lyase-like 286 600 IPR011050 -
Cla05g00966 604 Gene3D - 284 602 IPR012334 -
Cla05g00966 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 81 238 IPR035513 -
Cla05g00966 604 PANTHER PECTINESTERASE 30 602 - -
Cla05g00966 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 236 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g00045 Cla05g00966 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00966 Cla-Chr5:9738714 Cla09g00512 Cla-Chr9:4846710 2.98E-166 dispersed
Cla01g00045 Cla-Chr1:336726 Cla05g00966 Cla-Chr5:9738714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00966 - - csv:101214987 1088.56