Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00969 ATGGATTTGGACAGTATCGAGTGTGTATCTTCTTCAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACAGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCTGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTATTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGGTTTGTGCAACTACAGACCCTATGGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTTAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCCTTCCTGCGTTTCATGGGCGATGAGAATGAGGCGCGAACCTACAACTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATTATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGTGTCTGCATACCAAACTTTTGTAGCTAA 996 45.88 MDLDSIECVSSSDGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYGCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYNYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNFCS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9781419 9787581 - ClCG05G008930.2 Cla05g00969 272459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00969 331 Pfam Seven in absentia protein family 112 311 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla05g00969 331 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Cla05g00969 331 CDD RING-HC_SIAHs 68 106 - -
Cla05g00969 331 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 323 - -
Cla05g00969 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 323 - -
Cla05g00969 331 CDD Sina 184 312 - -
Cla05g00969 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 122 IPR013083 -
Cla05g00969 331 SUPERFAMILY RING/U-box 57 109 - -
Cla05g00969 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 177 311 IPR008974 GO:0005515
Cla05g00969 331 ProSiteProfiles Zinc finger SIAH-type profile. 123 183 IPR013010 GO:0008270
Cla05g00969 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 176 IPR013083 -
Cla05g00969 331 SUPERFAMILY TRAF domain-like 123 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00969 Cla-Chr5:9781419 Cla06g00118 Cla-Chr6:1278185 9.39E-178 dispersed
Cla05g00969 Cla-Chr5:9781419 Cla05g00970 Cla-Chr5:9788542 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00969 K04506 - csv:105434867 689.878