Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00970 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGTGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCTAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGCCTTCTTTCGATTCCATTGATCTTACCCCTTTTCTCTTCTTTGCCTTCTTTACGATTTCCTCGACGCAATTTGCACCAACTGGTGAAATTTTCAAATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2811 45.07 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKATSQDSEREPEPEGLLSIPLILPLFSSLPSLRFPRRNLHQLVKFSNFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9788542 9802422 - ClCG05G008935.1 Cla05g00970 272460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00970 936 MobiDBLite consensus disorder prediction 122 144 - -
Cla05g00970 936 SUPERFAMILY TRAF domain-like 728 920 - -
Cla05g00970 936 Pfam C-terminal, D2-small domain, of ClpB protein 438 508 IPR019489 -
Cla05g00970 936 ProSiteProfiles Zinc finger RING-type profile. 675 711 IPR001841 -
Cla05g00970 936 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524|GO:0016887
Cla05g00970 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cla05g00970 936 ProSiteProfiles Zinc finger SIAH-type profile. 728 788 IPR013010 GO:0008270
Cla05g00970 936 CDD Sina 789 917 - -
Cla05g00970 936 Gene3D - 437 534 - -
Cla05g00970 936 CDD AAA 228 339 - -
Cla05g00970 936 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 561 - -
Cla05g00970 936 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 561 - -
Cla05g00970 936 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cla05g00970 936 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 785 916 IPR008974 GO:0005515
Cla05g00970 936 CDD RING-HC_SIAHs 673 711 - -
Cla05g00970 936 Pfam Seven in absentia protein family 717 916 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla05g00970 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 727 IPR013083 -
Cla05g00970 936 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 163 525 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cla05g00970 936 MobiDBLite consensus disorder prediction 633 656 - -
Cla05g00970 936 Gene3D - 160 436 IPR027417 -
Cla05g00970 936 SMART AAA_5 227 389 IPR003593 -
Cla05g00970 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 783 IPR013083 -
Cla05g00970 936 SUPERFAMILY RING/U-box 662 714 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00756 Cla-Chr1:8830682 Cla05g00970 Cla-Chr5:9788542 9.99E-169 dispersed
Cla04g00105 Cla-Chr4:3138412 Cla05g00970 Cla-Chr5:9788542 4.58E-161 dispersed
Cla05g00970 Cla-Chr5:9788542 Cla08g00192 Cla-Chr8:3903932 0 dispersed
Cla05g01151 Cla-Chr5:12283303 Cla05g00970 Cla-Chr5:9788542 1.24E-18 dispersed
Cla05g00969 Cla-Chr5:9781419 Cla05g00970 Cla-Chr5:9788542 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00970 K03544 - csv:101215939 979.548