Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00970 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTTGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGTGGTGGCAGCGGTGGCAACTCCAACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTTCCTACTCCTAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATATAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGAACGCTATCTTTCAGGACAAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCAGAACCTGAAGGCCTTCTTTCGATTCCATTGATCTTACCCCTTTTCTCTTCTTTGCCTTCTTTACGATTTCCTCGACGCAATTTGCACCAACTGGTGAAATTTTCAAATTTTTTGTTGTGGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCATCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACGGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGTCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATTAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGAGTCTGCATACCGAACCTGTGTAGCTAA 2811 45.07 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSNSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGENIIDAVIVDEESIGLDRPGSGAKILYGKGALERYLSGQKATSQDSEREPEPEGLLSIPLILPLFSSLPSLRFPRRNLHQLVKFSNFLLWLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9788542 9802422 - ClCG05G008935.1 Cla05g00970 272460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00970 936 MobiDBLite consensus disorder prediction 122 144 - -
Cla05g00970 936 SUPERFAMILY TRAF domain-like 728 920 - -
Cla05g00970 936 Pfam C-terminal, D2-small domain, of ClpB protein 438 508 IPR019489 -
Cla05g00970 936 ProSiteProfiles Zinc finger RING-type profile. 675 711 IPR001841 -
Cla05g00970 936 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524|GO:0016887
Cla05g00970 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cla05g00970 936 ProSiteProfiles Zinc finger SIAH-type profile. 728 788 IPR013010 GO:0008270
Cla05g00970 936 CDD Sina 789 917 - -
Cla05g00970 936 Gene3D - 437 534 - -
Cla05g00970 936 CDD AAA 228 339 - -
Cla05g00970 936 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 561 - -
Cla05g00970 936 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 561 - -
Cla05g00970 936 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cla05g00970 936 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 785 916 IPR008974 GO:0005515
Cla05g00970 936 CDD RING-HC_SIAHs 673 711 - -
Cla05g00970 936 Pfam Seven in absentia protein family 717 916 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cla05g00970 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 727 IPR013083 -
Cla05g00970 936 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 163 525 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Cla05g00970 936 MobiDBLite consensus disorder prediction 633 656 - -
Cla05g00970 936 Gene3D - 160 436 IPR027417 -
Cla05g00970 936 SMART AAA_5 227 389 IPR003593 -
Cla05g00970 936 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 783 IPR013083 -
Cla05g00970 936 SUPERFAMILY RING/U-box 662 714 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00970 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101215939 979.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00756 Cla-Chr1:8830682 Cla05g00970 Cla-Chr5:9788542 9.99E-169 dispersed
Cla04g00105 Cla-Chr4:3138412 Cla05g00970 Cla-Chr5:9788542 4.58E-161 dispersed
Cla05g00970 Cla-Chr5:9788542 Cla08g00192 Cla-Chr8:3903932 0 dispersed
Cla05g01151 Cla-Chr5:12283303 Cla05g00970 Cla-Chr5:9788542 1.24E-18 dispersed
Cla05g00969 Cla-Chr5:9781419 Cla05g00970 Cla-Chr5:9788542 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla01g01481 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 1.5e-47 186.4
Cla11g00466 . 333 551 C3H Transcription Factor Family AT3G02290 62.6 5.4e-73 271.2
Cla06g01069 . 34 338 C3H Transcription Factor Family AT1G11020 75.3 5.3e-135 477.6
Cla07g01390 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.1e-68 255.0
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G08750 61.0 6.4e-121 431.0
Cla10g00873 . 77 501 C3H Transcription Factor Family AT3G16090 71.8 6.8e-166 580.9
Cla11g00466 . 329 551 C3H Transcription Factor Family AT5G38895 56.3 3.7e-70 262.3
Cla08g01518 . 23 234 C3H Transcription Factor Family AT1G19310 66.8 1.3e-79 293.1
Cla01g01589 . 16 225 C3H Transcription Factor Family AT1G19310 59.8 2.1e-69 259.2
Cla01g01866 . 100 387 C3H Transcription Factor Family AT2G22120 70.7 3.2e-128 455.3
Cla08g01070 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.2e-40 161.8
Cla06g01484 . 30 426 C3H Transcription Factor Family AT1G18470 68.0 2.6e-158 555.4
Cla01g00581 . 81 312 C3H Transcription Factor Family AT1G68200 50.2 5.0e-50 195.3
Cla08g00460 . 60 552 C3H Transcription Factor Family AT2G31770 56.2 1.4e-164 576.6
Cla11g00869 . 51 515 C3H Transcription Factor Family AT2G31770 52.4 1.0e-146 517.3
Cla08g00460 . 60 559 C3H Transcription Factor Family AT2G31760 54.8 2.1e-162 569.3
Cla11g00869 . 65 500 C3H Transcription Factor Family AT2G31760 54.3 2.7e-149 525.8
Cla09g02094 . 114 346 C3H Transcription Factor Family AT5G55970 67.8 5.0e-93 338.2
Cla04g00220 . 93 453 C3H Transcription Factor Family AT5G63780 57.2 8.2e-116 414.1
Cla10g01676 . 1 428 C3H Transcription Factor Family AT3G58030 52.7 1.0e-104 377.5
Cla09g02094 . 116 415 C3H Transcription Factor Family AT4G26580 62.3 5.2e-109 391.3
Cla07g00504 . 1 503 C3H Transcription Factor Family AT5G01960 53.0 3.5e-134 475.3
Cla02g01065 . 51 205 C3H Transcription Factor Family AT2G04240 59.3 8.3e-44 173.7
Cla02g02217 . 71 315 C3H Transcription Factor Family AT5G19430 53.3 3.0e-64 242.3
Cla07g01061 . 188 606 C3H Transcription Factor Family AT5G45290 55.4 2.6e-105 379.8
Cla02g02217 . 110 315 C3H Transcription Factor Family AT5G12310 56.4 2.9e-59 225.7
Cla06g01384 . 413 705 C3H Transcription Factor Family AT5G05810 52.8 3.9e-74 275.8
Cla11g00617 . 53 219 C3H Transcription Factor Family AT5G05830 65.3 2.0e-58 222.6
Cla10g02055 CCT,ECH 70 215 C3H Transcription Factor Family AT5G05830 58.2 3.2e-45 178.7
Cla04g00736 CCT,ECH 38 168 C3H Transcription Factor Family AT5G05830 61.8 3.1e-40 162.2
Cla11g00466 . 333 551 C3H Transcription Factor Family AT5G15790 59.6 3.0e-71 265.4
Cla11g00648 CCT,ECH 493 764 C3H Transcription Factor Family AT3G55530 80.2 5.2e-115 411.0
Cla09g00626 . 85 357 C3H Transcription Factor Family AT1G63900 75.5 9.6e-117 416.8
Cla05g00288 . 61 443 C3H Transcription Factor Family AT2G44580 53.7 3.4e-120 428.7
Cla08g01518 . 32 157 C3H Transcription Factor Family AT1G74990 59.8 9.5e-41 163.3
Cla05g01648 . 142 422 C3H Transcription Factor Family AT5G20910 61.8 3.0e-95 345.5
Cla10g00873 . 195 487 C3H Transcription Factor Family AT1G65040 68.8 2.0e-105 379.4
Cla01g01589 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 1.1e-73 273.5
Cla08g01518 . 13 236 C3H Transcription Factor Family AT2G23780 57.0 7.2e-70 260.8
Cla10g01555 CCT 1 317 C3H Transcription Factor Family AT3G10810 53.6 2.3e-81 300.1
Cla01g00245 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.0e-45 179.1
Cla05g00192 . 49 376 C3H Transcription Factor Family AT1G68070 50.2 1.0e-88 323.9
Cla01g00642 CCT 18 307 C3H Transcription Factor Family AT1G68070 60.2 3.4e-87 318.9
Cla11g01841 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.7e-51 198.7
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.0e-45 177.9
Cla08g01288 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 1.0e-111 400.6
Cla10g00012 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.4e-39 157.9
Cla08g00460 . 77 596 C3H Transcription Factor Family AT2G31510 70.8 2.8e-220 761.5
Cla11g00869 . 82 541 C3H Transcription Factor Family AT2G31510 73.3 4.2e-208 721.1
Cla01g01481 . 7 168 C3H Transcription Factor Family AT2G35910 64.0 1.1e-54 210.3
Cla10g01731 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.2e-41 164.9
Cla04g00105 . 1 307 C3H Transcription Factor Family AT2G41980 80.5 5.0e-151 530.8
Cla05g00970 . 666 923 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cla05g00969 . 61 318 C3H Transcription Factor Family AT2G41980 79.8 1.0e-127 453.4
Cla02g02306 . 174 470 C3H Transcription Factor Family AT2G41980 71.8 3.9e-127 451.4
Cla01g00756 . 48 305 C3H Transcription Factor Family AT2G41980 78.7 4.7e-125 444.5
Cla06g00118 . 43 301 C3H Transcription Factor Family AT2G41980 74.9 9.9e-123 436.8
Cla05g02675 . 48 259 C3H Transcription Factor Family AT2G41980 68.5 3.5e-96 348.6
Cla05g00579 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.7e-95 345.9
Cla06g01657 CCT 43 333 C3H Transcription Factor Family AT3G47990 63.9 2.9e-111 398.7
Cla01g01293 CCT 348 613 C3H Transcription Factor Family AT3G47990 57.7 1.0e-87 320.5
Cla11g01841 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.5e-52 201.4
Cla10g00012 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cla09g01740 . 37 405 C3H Transcription Factor Family AT3G18930 54.4 3.2e-84 309.3
Cla10g00050 . 20 235 C3H Transcription Factor Family AT5G66070 75.0 3.3e-75 278.5
Cla10g01969 . 680 950 C3H Transcription Factor Family AT5G02750 53.4 6.4e-68 254.6
Cla06g01484 . 34 504 C3H Transcription Factor Family AT1G73950 66.2 2.4e-178 622.1
Cla08g00174 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.6e-39 157.9
Cla01g00642 CCT 15 256 C3H Transcription Factor Family AT2G01735 59.6 3.9e-72 268.5
Cla10g00333 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.4e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00970 Cla_Chr05 FPKM 15.542031 17.161892 14.294772 15.481918 19.488382 16.287739 18.915987 13.609045 13.311381 14.226293