Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00976 ATGCCTATCTCACAAGAAACATCCAATTTTGATGAGATTTCTATGAAGCAGAGTTTGATTTTCTCTGATTGTCTCAAGGATTTAAAGAACCTGAGGGCACAATTATACTCAGCAGCAGAATATTTTGAACTCTCTTACACGAATGATGACCAAAAACAGATAGTGGTAGAAACGTTGAAAGATTATGCTGTCAAAGCTCTTGTGAATACTGTGGATCACTTAGGTTCTGTTACTTTTAAGGTTAATGATCTTTTGGATGAAAAGGTGGATGAAGTATCTGGAACAGAGTTTAGGGTGTCATCCATTGAACAGAGGCTAAGAACGTGCCAAGAGTATATCGATCGTGAAGGGCATTCCCAACAATCCTTGGTGATAAATACACCAAAGTATCATAAGCGCTACATATTACCAGGCAAGTTTACTATCTTTTCCCCAAGACTTCACACTTTGTTTCCCTTGCATTCTGAGATTAAAAAAAATTCTCGAGTTCTTATAGTTCATAAAATTTGTGCAGTTGGGGAGACCATGAATGGGGGTACCCAAACTAAATCCAAGTACCAAGGATGCAACCTAGATGATGAAGATGAGTGGCACCAATTTAGAAATGCCGTTCGAGCAACTATTAGGGAAACACCACCATCCATTATCAGTAAAGAAAATTCTCCTGTGCCTCCTCAACGACCATCCCCGTCTCCACAACCTAGAACTCGCAGCCTTATGTCTGCTCCCATAAAATCCAATCATGTTTGTTTCAAAGCAGATAAGCGGTCGGTTTCACCACACCGGTTTCCACTTCTGCGTTCTGGTTCGCTCTCGAGTAGGCCAAAGACACAAAGCTCAAGTCGATCAACTACTCCCCACTCAAGTAGGCCAACCACTCCAAGTAATTCCAATGGCCAACGACGGTGTCCATCAGAACCTCGAAAATCAGCATCGATGCGGATACCGGCAGAAAGGGACAACAGCAAGGATGTTGAACAATATCCCAGCAAAAGCAAGCGCCTCTTAAAGGCCCTGCTTAGCCGACGCAAGTCGAAGAAAGACGATATGCTGTACACTTATTTGGATGAATACTAG 1077 42.43 MPISQETSNFDEISMKQSLIFSDCLKDLKNLRAQLYSAAEYFELSYTNDDQKQIVVETLKDYAVKALVNTVDHLGSVTFKVNDLLDEKVDEVSGTEFRVSSIEQRLRTCQEYIDREGHSQQSLVINTPKYHKRYILPGKFTIFSPRLHTLFPLHSEIKKNSRVLIVHKICAVGETMNGGTQTKSKYQGCNLDDEDEWHQFRNAVRATIRETPPSIISKENSPVPPQRPSPSPQPRTRSLMSAPIKSNHVCFKADKRSVSPHRFPLLRSGSLSSRPKTQSSSRSTTPHSSRPTTPSNSNGQRRCPSEPRKSASMRIPAERDNSKDVEQYPSKSKRLLKALLSRRKSKKDDMLYTYLDEY 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9854265 9858443 + ClCG05G009010.2 Cla05g00976 272466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00976 358 PANTHER ABL INTERACTOR FAMILY MEMBER 4 358 IPR028457 -
Cla05g00976 358 MobiDBLite consensus disorder prediction 312 331 - -
Cla05g00976 358 PANTHER PROTEIN ABIL3 4 358 - -
Cla05g00976 358 Gene3D - 10 113 - -
Cla05g00976 358 MobiDBLite consensus disorder prediction 208 332 - -
Cla05g00976 358 MobiDBLite consensus disorder prediction 270 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00976 - - - csv:101216900 500.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00132 Cla-Chr5:1245826 Cla05g00976 Cla-Chr5:9854265 1.33E-37 dispersed
Cla05g00976 Cla-Chr5:9854265 Cla06g00864 Cla-Chr6:12945414 1.33E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1031 . . . Bda07g01938 Bpe03g00193 . . . Cmo16g00048 . . . . . . . Cpe14g00033 Bhi01g01500 . . . . . . . . . . . . . Cone1ag0991 Cone5ag0696 . . . . . Cme06g01152 . Blo09g00021 . . . . . . . . . Cma16g00040 . . Car18g01239 . . . . . . . . . Cla05g00976 Cam05g1069 Cec05g1075 Cco05g1067 Clacu05g1061 Cmu05g1012 Cre05g1088 . Csa03g01977 Chy06g01190 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004623 1 4 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00976 Cla_Chr05 FPKM 4.459779 3.95237 10.279127 9.8747 19.822002 15.231789 16.198069 23.094152 20.846062 22.129879