Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00978 ATGCAGAAACGCCTTTTCTTTTCCTCTACTCGTCGTAAGGTCCGAATGGCTTGTATACAGTATGGTAGAAATGCACTCCAGAAAATTATTAAAAATACCAGGCTTCACCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGAGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTGACAACAAGCATTGAGAAGCTTGGGAAAGCTGGAGAGACGGTTAAGGTTGCCCCTGGATACTTTCGGAACCATCTTATGCCCAAGTTGTTGGCTGTTCCAAACATTGACAAGTATGCTTATCTGATCAAGGAGCAACGCAGGATTTACCAACCAGTTGACGAAGAGGTCGTTAAGGTTGTAATGGTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAAACGTCTGGATAGTATTCAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAGTTTCGTACTCGTGCTACAAAAGACGAGCCCTTAACTTTGCAATCTTCTGTGACAGTAGATGACATTGTTGCTGAGGTGGCACGACAATTTTCTGTTCAAATTGCGCCCGAAAATCTGAATTTACCATCCCCCCTGTCCACATGTGGTGAATATGAAGTACCGCTTCGCTTTCCAAAGTCGATCCCCTTGCCTGAAGGAAAGATCTACTGGGCCCTCAAAGTGAAAGTCCGTAGTAAGTAA 702 43.45 MQKRLFFSSTRRKVRMACIQYGRNALQKIIKNTRLHPSDQMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVDEEVVKVVMVTKEDKMKEYEKAAKRLDSIQLVLRRLIDKEKFRTRATKDEPLTLQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSTCGEYEVPLRFPKSIPLPEGKIYWALKVKVRSK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9860797 9863455 + ClCG05G009030.1 Cla05g00978 272468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00978 233 SUPERFAMILY L9 N-domain-like 57 110 IPR009027 -
Cla05g00978 233 Gene3D - 57 111 IPR036935 -
Cla05g00978 233 PANTHER 50S RIBOSOMAL PROTEIN L9 10 232 IPR000244 GO:0003735|GO:0005840|GO:0006412
Cla05g00978 233 Coils Coil 122 152 - -
Cla05g00978 233 Pfam Ribosomal protein L9, N-terminal domain 58 94 IPR020070 -
Cla05g00978 233 Pfam Ribosomal protein L9, C-terminal domain 162 213 IPR020069 -
Cla05g00978 233 SUPERFAMILY Ribosomal protein L9 C-domain 127 215 IPR036791 -
Cla05g00978 233 Gene3D - 127 231 IPR036791 -
Cla05g00978 233 PANTHER BNAA02G10490D PROTEIN 10 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00978 K02939 RP-L9, MRPL9, rplI; large subunit ribosomal protein L9 - csv:101217377 379.793
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1026 . . . . . . . . . . . . . . Sed07g0868 . . Bhi01g01504 Tan01g0082 Cmetu06g0080 . Hepe07g0051 Mch10g0049 . . . . . . . . Cone1ag0994 Cone5ag0698 . . . . . Cme06g01154 . . . . . . . . . . . . . . Car18g01237 . . . . . . . . . Cla05g00978 . Cec05g1077 Cco05g1069 Clacu05g1063 Cmu05g1014 . . Csa03g01975 Chy06g01187 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011626 1 1 3 1 1 0 1 1 1 1 1 1 0 1 1 1 1 2 0 0 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00978 Cla_Chr05 FPKM 18.984711 18.210516 14.044073 10.78717 25.296183 25.358793 28.192352 18.035835 19.665874 19.153345