Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00979 ATGGAGAAGTCTAGATCTAAGAGAAACTACTACTATGATCACCAAGACTATGATTCGGAGTCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACCACCCAAATAATAACTATCGTCACCGTGGGAATGCTGTTCGACCGTCTAAACCTCAAGACCAATCTCTTATGGTCACCACCACTTACAGGATACTCTGTCATGATGCTAAGGCCGGGGGAGTTATCGGCAAATCTGGTAGTATTATTAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCTGGTGATGAGGAGAGAATAATTGAGATATCCGACACTCGGCGGCGGGACCCGGAAGGTCGGATGCCGTCGTTCTCTCCGGCTCAAGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAAAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTCCTGAGGATGAGGAGGATGATTACGGTGGCGTTAGAGGAGGAGCTGGCGGTGGTGGTGGTGGCCGTGTGGCGACCAGGCTTGTTGTGTCTAGAATGCACGTTGGTTGTTTGCTTGGGAAGGGAGGAAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATTAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCAGAGGAGATTGTTCAGATTGTTGGAGATGCAAATGCCGTAAAGAAAGCTATAGCTATTGTTTCAGCACGCTTGAGAGAGAGTCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCGGATCGTATTTTCCCTCCTGATGATGATTATGTTCCACATAGCGCACGTCGATTATCAATGGATGGACGGCCATTTAGACCACGTATGTCTGCTTCTAATACAAGAGGCAATGACTATTCCAACCGTCAATCTAATTTTTTGGTGGAGCCTGGGGCTGCTCCTGTAAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGATAAGGTAGATAGTGTTATTGGAGAGTCTAATGGAATCATAGAATTACTTCGGAACGATGTTGGTGTGGATATCAAGGTTTCTGACCCTGTGACTGGTTCAAACGAACAGATTCTTATCATTTCCTCGGAGGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAGGATAACATCGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACATATTGTGCCAAGAGAAGACCTTCCCATGTTTGTATCAGGCGCGGATGAGCTTGTACAGATCATAGGGGACATAAAAGCAGCTCGAGATGCTCTTGTTGAGTTAACATCAAGATTACGGAATTACCTTTATAAGGAGCCGTTCCAAAAAGATGCAAGCCCTCCAGTCTCAGTACAAAGCACCATGGTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTAATAGTGGAAATGATTCTTCAAGCACAGCCTTTCAAAATGCGATTCTTTCTTTTCAAAACAGTCTCTTCTCAGCCTTAGTGAGTGGAGGCACATTCTTTCTTTGGAAACGAAACTTTTTCAGAGTAAGGTTCTTCTGGAAACTGCTTCAGCATAAAATTGCTCTCTTACGGTCAATGCACACCTCTCCTGAGACTTTGGCTATGGACCAAAACGATTCAAACTATCATTTGCAGGAAACTGGAGCGTCGAGCAATGAAACTGGTATGCAGAATGAAAACGACCGACGTGAAGAATTGCCTACTGGGTTAAATAGATCAATGACTGTTCATTCACCTCTAAGGATTCCTGTGCCGCTCGTCACTCGGAGTACACTTGAAGTTGTGATACCAGAGCCTGCAATCCCCAAGCTTATAACAAAATCAAAAAACAAGCTTGCTCAGATCAGTGAGTTGTCCGGAGCTAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTAAGCAGTAAGTCTCTCACTAACCCATTTTGTGTCACATTTATAATTGCTTCTGACCATTGGGAAATTGTCAGAAATAACCCTCAAATATTTTCATCATTCACAATTAGCCCCTGTTATTTTGACAATTTTCCCTCAAATTTTCCCTCTGTATTCATTTATTTGTTTCACAATTTTCAGTGCAAGAAGATGCTGTTTTTTTTTTCTGGAAGAGCCATGGAGGAAGACGGAGCAAGATTAGCCATTGCCATGTAA 2418 43.26 MEKSRSKRNYYYDHQDYDSESMGRTRPRYNNNHHPNNNYRHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGGGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDANAVKKAIAIVSARLRESQHRDRSHFHGRLHSPDRIFPPDDDYVPHSARRLSMDGRPFRPRMSASNTRGNDYSNRQSNFLVEPGAAPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSEEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNYLYKEPFQKDASPPVSVQSTMVSLGLEESSSNNNAAAREVNSGNDSSSTAFQNAILSFQNSLFSALVSGGTFFLWKRNFFRVRFFWKLLQHKIALLRSMHTSPETLAMDQNDSNYHLQETGASSNETGMQNENDRREELPTGLNRSMTVHSPLRIPVPLVTRSTLEVVIPEPAIPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSSKSLTNPFCVTFIIASDHWEIVRNNPQIFSSFTISPCYFDNFPSNFPSVFIYLFHNFQCKKMLFFFSGRAMEEDGARLAIAM 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9867049 9872417 + ClCG05G009040.2 Cla05g00979 272469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00979 805 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 112 IPR036612 GO:0003723
Cla05g00979 805 Gene3D - 332 494 - -
Cla05g00979 805 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 642 723 IPR036612 GO:0003723
Cla05g00979 805 ProSiteProfiles Type-1 KH domain profile. 653 717 - -
Cla05g00979 805 ProSiteProfiles Type-1 KH domain profile. 175 245 - -
Cla05g00979 805 Pfam KH domain 61 110 IPR004088 GO:0003723
Cla05g00979 805 Pfam KH domain 655 718 IPR004088 GO:0003723
Cla05g00979 805 Pfam KH domain 419 484 IPR004088 GO:0003723
Cla05g00979 805 Pfam KH domain 178 246 IPR004088 GO:0003723
Cla05g00979 805 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Cla05g00979 805 MobiDBLite consensus disorder prediction 285 308 - -
Cla05g00979 805 ProSiteProfiles Type-1 KH domain profile. 333 400 - -
Cla05g00979 805 Gene3D K Homology domain, type 1 652 724 IPR036612 GO:0003723
Cla05g00979 805 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Cla05g00979 805 CDD PCBP_like_KH 61 135 - -
Cla05g00979 805 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 410 497 IPR036612 GO:0003723
Cla05g00979 805 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 256 IPR036612 GO:0003723
Cla05g00979 805 MobiDBLite consensus disorder prediction 24 51 - -
Cla05g00979 805 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 562 - -
Cla05g00979 805 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 562 - -
Cla05g00979 805 CDD PCBP_like_KH 179 246 - -
Cla05g00979 805 SMART kh_6 652 722 IPR004087 GO:0003676
Cla05g00979 805 SMART kh_6 332 405 IPR004087 GO:0003676
Cla05g00979 805 SMART kh_6 416 490 IPR004087 GO:0003676
Cla05g00979 805 SMART kh_6 174 250 IPR004087 GO:0003676
Cla05g00979 805 SMART kh_6 58 139 IPR004087 GO:0003676
Cla05g00979 805 MobiDBLite consensus disorder prediction 16 51 - -
Cla05g00979 805 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 326 389 IPR036612 GO:0003723
Cla05g00979 805 Gene3D K Homology domain, type 1 173 254 IPR036612 GO:0003723
Cla05g00979 805 CDD KH-I 655 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00979 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1129.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00979 Cla-Chr5:9867049 Cla09g01771 Cla-Chr9:35085205 2.53E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00979 Cla_Chr05 FPKM 6.70231 7.528804 5.401047 3.754568 11.085311 9.167812 11.244804 14.160436 13.545838 14.636518