Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00981 ATGAAAGTTTCTCGCATTAATGTGGTGTCGAGCCTCCATACTCCAATGCCTAAGTTACTGAATGAAGGAAAAAGTCTAAAGGGAGGGAAGAGAAGTATGGAAAAGTTTGGAGATGAGGATGAGGCAGAGGTTTTGGGGTCGGACCCCACTGTGATGTTTTTGATTTCCCGATTCAGCAAAATGGCTTTGCTGAGTCCTCGATTGCATAGATTCCGGCTAACCAAGCTCCACCATACCTCCGCCTCCAAACCTACCAAAACAACTAAGCTCACTCTCACAAGAAAAACCAGATGCTGCTCTGCCATAGCTATTGATGCTCCATCTTCTTTAACAGATGCTGCAGGAATCAGATGGGGTTCCACTACTTTGCAAGGCTTGCGAGAAGAAATGGAAGACGATGCTGTTGTGCGGTCTGATGGTTTCAATGGCTTCTTGTTTGCTGCAGTGTTCGATGGCCATGGTGGCCATTCCTCTGTCAAGTTCCTCAGGGAGGAGCTGTACAAAGACTGCGTCGTAGCTTTACAAGGCGGCCTGCTATTGAATGGAGGGGATTTTGAAGTGATAAAATCGGCGTTGGAGAAAGCTTTTGATGATACTGATAAGAGATTACTCCTTTTGCTTGAGGCAGCTGGGGAGGAAGATGAATCTGGTTCCACTGCCACTGTTGCATTCATTCGAAATGATGTGCTGTTCATTTCACATATTGGTGACTCTTGTATTGTATTATCTCGTTCTGGAGGAGCACAGGTGTTGACTAGTTCTCATCGGCCTTATGGAAATAACAGCACTTCACTACAAGAAATTAGAAGAATTAGAGAAGCAGGTGGATGGATTGTTAATGGGAGAATCTGCGGGGACATCTCTGTATCGCGTGCATTTGGTGACATACGATTCAAGACAAAGAAAATCGAGTTTGGATGCTACAAAAAGGAGTTGAAGAAGGGAGATGGTCAGAAAAATTTATTTCTCGGTAGTGTACAGTTCAATGGAGATTTGGTTACTGCATCACCAGAAATTTTCCAAGTTACGCTCGGATCAAATGTTGAATTTATACTGATGGCATCAGATGGCCTATGGGATTACATGAATAGCTCTGATGCGGTTATATTTGTTCGGAATGAACTTCGACAGCATGGCGATGTTCAGCTAGCATGTGAAGCCCTCGCTCAAGCAGCCTTGGATAAAGGGTCACAAGACAATATCAGCATTATCATGGCTGATTTAGGGCGGACAGATTGGCAAAATTTGCCCCTTAAGCAAGACAATGTCATATTTGAGCTGGCTCAAGCTTTCGCTACGATCGGACTTGTTTCTTTTGGTATTTGGTGGGCATCCTCTAGTTTCTCTCTTTAA 1353 44.12 MKVSRINVVSSLHTPMPKLLNEGKSLKGGKRSMEKFGDEDEAEVLGSDPTVMFLISRFSKMALLSPRLHRFRLTKLHHTSASKPTKTTKLTLTRKTRCCSAIAIDAPSSLTDAAGIRWGSTTLQGLREEMEDDAVVRSDGFNGFLFAAVFDGHGGHSSVKFLREELYKDCVVALQGGLLLNGGDFEVIKSALEKAFDDTDKRLLLLLEAAGEEDESGSTATVAFIRNDVLFISHIGDSCIVLSRSGGAQVLTSSHRPYGNNSTSLQEIRRIREAGGWIVNGRICGDISVSRAFGDIRFKTKKIEFGCYKKELKKGDGQKNLFLGSVQFNGDLVTASPEIFQVTLGSNVEFILMASDGLWDYMNSSDAVIFVRNELRQHGDVQLACEALAQAALDKGSQDNISIIMADLGRTDWQNLPLKQDNVIFELAQAFATIGLVSFGIWWASSSFSL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9876491 9881341 + ClCG05G009060.1 Cla05g00981 272471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00981 450 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
Cla05g00981 450 Pfam Protein phosphatase 2C 119 401 IPR001932 -
Cla05g00981 450 ProSiteProfiles PPM-type phosphatase domain profile. 117 408 IPR001932 -
Cla05g00981 450 Gene3D - 116 414 IPR036457 -
Cla05g00981 450 PANTHER PROTEIN PHOSPHATASE 2C 65 445 IPR015655 GO:0004722|GO:0006470
Cla05g00981 450 SUPERFAMILY PP2C-like 114 409 IPR036457 -
Cla05g00981 450 CDD PP2Cc 116 408 IPR001932 -
Cla05g00981 450 SMART PP2C_4 107 406 IPR001932 -
Cla05g00981 450 PANTHER PROTEIN PHOSPHATASE 2C 57 65 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00981 Cla-Chr5:9876491 Cla08g00652 Cla-Chr8:18724501 9.48E-30 dispersed
Cla05g00981 Cla-Chr5:9876491 Cla09g00444 Cla-Chr9:4222654 2.45E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00981 K04457 - csv:101218076 647.121