Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00984 ATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTCTCTTCTATCGACTCTCCCGAGTTCAGTCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAAAATTCTTCATTCCCCAGAGTTTCTCTTCTCCAGATCGCTTGCCAATTCCACTCAGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTACTCTCCCTTCCTTTATCCTCAATTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACTTGTCCACTACTTTCTGCTCCTATGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCTCTCTGGCCTTGATCGTATTGAACCTTTTATGGATATTACGAGCATTTACAATCATCTTCAGCATAAGCAAAATGGAAGAAAATTACATAAGCAAACTAAGAGTCTTGCAGCTATCTGCAGTGAAATACTGGGATTCTCTCTTTCGAAGGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATATGCAGCCATGGATGCCCACTGCTTGCTTGAAATATTTAATGTCTTCTACTCCAAGGTTGTTAAAGAAGGAGATGTTTTAAGGAATGTTTCTGCAGTTCCTTCCACTGAAATGAATATTGGGTTGAAAGTGATTCTGGAAAAGCAGGATGTGCATGAGAAGATATTAAGGTCCAAAGTTTCTGAAGCCTCAAACATTATCAGAGCTACTGCATCTGATTTTGCACAGAGTATGGCTAATATAAGGGGAAATTGTTCTGCATCTTCGAGTATAAATAGTATGCATATGGATAAAGATCTTCAGAAAATTGTCAAGAACTACGGTGAAAAAATTATTTTGAAAGAGTCAGACAAAAAGCCCAGGACCTCCAAACGAAAAGGCAAGAGATCATCAACTATGAAAGTGGTTTGCAGTGAAAAGCAAATCGTGTGTGTTGAAGATTGGCAAGGCCCCCCACCATGGGATTTGTCCTTTGGGGGTGATGGATGCCCTAAATTTCTATGTGATGTTATGGTTGAAGGCCTTGCAAAACATCTACGTTGTGTTGGGATTGATGCTGCAGTTCCATTTTCCAAAAAGCCGGACACTAGGGAATTAATTGATCAAGCGTGCAAGGAGAAGAGAGTACTCTTGACCAGGGATGCTAAACTGCTGAGACACGAGTATTTGTTATGTAATCAAATATACAGAGTTAAAAGTCTTCTAAAGAACGAACAGTTACTCGAGGTTATTGAAACTTTCAATTTGAAAATTAGTGAGGATCAGCTGATGTCTAGATGCACCAAATGCAATGGAAGGTTTATTCAAAAGTCCCTTACAACAGAGGAGGCTGTGCAGGCAGCGAAGGGTTTCCAAAAAATTCCTAACTGTTTGTTTGACAGGAATTTAGAGTTCTGGCAGTGCATGGACTGTCACCAACTATACTGGGAGGGGATACAATATCGCAATGCAATCCAGAAGTTCATTGATGTTTGCAAGTTGAATGACTAG 1605 42.31 MCLLMDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLLQIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSYGGGGGGGGGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICSEILGFSLSKELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFYSKVVKEGDVLRNVSAVPSTEMNIGLKVILEKQDVHEKILRSKVSEASNIIRATASDFAQSMANIRGNCSASSSINSMHMDKDLQKIVKNYGEKIILKESDKKPRTSKRKGKRSSTMKVVCSEKQIVCVEDWQGPPPWDLSFGGDGCPKFLCDVMVEGLAKHLRCVGIDAAVPFSKKPDTRELIDQACKEKRVLLTRDAKLLRHEYLLCNQIYRVKSLLKNEQLLEVIETFNLKISEDQLMSRCTKCNGRFIQKSLTTEEAVQAAKGFQKIPNCLFDRNLEFWQCMDCHQLYWEGIQYRNAIQKFIDVCKLND 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9899881 9904428 + ClCG05G009095.1 Cla05g00984 272474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00984 534 Pfam 3'-5' exonuclease 25 224 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cla05g00984 534 Pfam Mut7-C RNAse domain 369 525 IPR002782 -
Cla05g00984 534 PANTHER 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN 11 531 - -
Cla05g00984 534 SUPERFAMILY Ribonuclease H-like 12 229 IPR012337 -
Cla05g00984 534 Gene3D - 10 229 IPR036397 GO:0003676
Cla05g00984 534 SMART 35exoneu6 15 226 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00984 K09122 K09122; uncharacterized protein - csv:101218316 929.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01687 Cla-Chr3:32765009 Cla05g00984 Cla-Chr5:9899881 2.80E-10 dispersed
Cla05g00984 Cla-Chr5:9899881 Cla04g00557 Cla-Chr4:19143914 4.48E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1010 . . . Bda07g01943 Bpe03g00198 . . Bma14g02016 Cmo16g00041 . . . . . . . Cpe14g00028 Bhi01g01513 . . . . . . . . . . . . . Cone1ag1000 . . . . . . Cme06g01165 . Blo09g00016 . . . . . . . . . Cma16g00035 . Car16g00035 . . . . . . . . . . Cla05g00984 Cam05g1075 Cec05g1082 Cco05g1075 Clacu05g1069 Cmu05g1020 Cre05g1094 . Csa03g01969 Chy06g01179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009012 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00984 Cla_Chr05 FPKM 3.766943 4.852503 10.450741 9.995489 4.97856 5.765689 4.339174 15.375426 14.612795 14.387757