Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00986 ATGCGTGGAGAGCCACCCTGCATCGAAGGTTATCTCGGGATAAACGCATTGAAGGCCGCAAGGCATTGGAAGTTGAAGGCCACGAGACCTAAACAACAGAGGGAGGTAAAAGGAGATGTTCATGTCGATTTGGAGTGGAAATCTCGTCGTTACCGTGGGGGAAACTTGAGCTGGAGCAGAGGACTCAGTTGGTGTTATTCAATCAGAGTTGAAGAAGGAAGAAGAAAGGAAGAAGGAAACTATTCTGCTGCAACAGTAGTATTGCTGAGAGAGCGAGAGACAGGGCAGCGAAACAAATGTCGCTGTAACGCAAGAGGGGTTTTGCGTCTCACAATTCTCACTGAAGTCTCGCTGGGTGTCGCTCCTCAGGCCAGGAAGAGCTCGGGGAGGCTTATAATCCACTTAGAGCTAAGACAAGTTGTAGCGAGCGTGTTCGAGACGCCTAGCCTACAGAAGTATCTCGTCTGGGCCTATCTTGAAGTAGACCTTTGGGATAGTTATGGTTTGAATGTATTATTAAATAAAATTTTATTCGAGTTCATTATCGATCTTGGTCGAGATACAACTATGAAAATAATTGGCCCAAAAAAGAGCATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCCGTCGTCGGCAAGCGCCCTCGCGTCGATTACGATACCACTGGTCTTCACGAGTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAGTGCTCCAAGGAATTAAAAGTGTTGATTCCATCAACGAGTCCTATGAACGTTACCTACGCAGCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCTAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGACGTGAAGTAGCTCACATATTCCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTCCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTGGCGGGCATCGTGGAAAGCGTTGAATTATGTGATTTCACAGGATTTGCGCGTACGATTTTTCCTTTGGTCATTATTTTCGGCTAGTGAGAATTTCGACTTGACAATATCCAGACAAGAAACCATCATTGCGAGTTTGAGGCATCTGCAATTTCTTGAGGGCAAGGAAAGGGTGAAATGTAGCTTAATTGCTCCAACACGAAGCATCCTGAAGGCAGAAGAAGGAACATCAAAATTCTTCATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAACCGCACTTCAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCAGTCGGTTCAAAGTCATGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCGACGGATGCAAAGCGCAGCAGCAAGCGTCACCCTGGCAGCCTGAAACCTGCTGCTTGA 1992 46.29 MRGEPPCIEGYLGINALKAARHWKLKATRPKQQREVKGDVHVDLEWKSRRYRGGNLSWSRGLSWCYSIRVEEGRRKEEGNYSAATVVLLRERETGQRNKCRCNARGVLRLTILTEVSLGVAPQARKSSGRLIIHLELRQVVASVFETPSLQKYLVWAYLEVDLWDSYGLNVLLNKILFEFIIDLGRDTTMKIIGPKKSMSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGYKFDEFDRDSVNLRWRASWKALNYVISQDLRVRFFLWSLFSASENFDLTISRQETIIASLRHLQFLEGKERVKCSLIAPTRSILKAEEGTSKFFMEKLPTEICLKIFCLLDSQNLATALQVCRKWNSLASDNILWSNLFKERWGENHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSSKRHPGSLKPAA 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9911735 9925927 + ClCG05G009110.2 Cla05g00986 272476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00986 663 SUPERFAMILY F-box domain 485 564 IPR036047 GO:0005515
Cla05g00986 663 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 211 413 - -
Cla05g00986 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 331 415 IPR000504 GO:0003723
Cla05g00986 663 CDD RRM_RBPMS_like 331 411 - -
Cla05g00986 663 ProSiteProfiles F-box domain profile. 489 535 IPR001810 GO:0005515
Cla05g00986 663 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 211 413 - -
Cla05g00986 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 333 401 IPR000504 GO:0003723
Cla05g00986 663 SUPERFAMILY RNA-binding domain, RBD 325 401 IPR035979 GO:0003676
Cla05g00986 663 Gene3D - 480 569 - -
Cla05g00986 663 SMART rrm1_1 332 409 IPR000504 GO:0003723
Cla05g00986 663 Pfam F-box-like 493 536 IPR001810 GO:0005515
Cla05g00986 663 Gene3D - 327 416 IPR012677 -
Cla05g00986 663 SMART fbox_2 495 535 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00986 - - - csv:101218789 424.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00281 Cla-Chr4:9076708 Cla05g00986 Cla-Chr5:9911735 1.98E-06 dispersed
Cla05g00986 Cla-Chr5:9911735 Cla08g00678 Cla-Chr8:19078840 2.33E-48 dispersed
Cla05g00986 Cla-Chr5:9911735 Cla02g01011 Cla-Chr2:19051115 4.06E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1004 . . . Bda07g01945 Bpe03g00200 . . . Cmo16g00039 . . . . . . . Cpe14g00026 Bhi01g01516 Tan01g0067 . . Hepe07g0042 Mch10g0042 . . . . . . . . Cone1ag1002 Cone5ag0710 . . . . . Cme06g01167 . Blo09g00014 . . . . . . . . . Cma16g00033 . Car16g00032 . . . . . . . . . . Cla05g00986 Cam05g1077 Cec05g1085 Cco05g1079 Clacu05g1071 . . . Csa03g01967 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010365 1 3 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00986 Cla_Chr05 FPKM 4.040763 4.244494 7.119024 7.392608 10.298965 10.655769 11.006004 9.960861 8.126191 8.052411