Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00988 ATGGGGGTTTCATCAGAGACCAAATTATTGCAGAACCTCATACTCTACGCTGCCAGTGCTGCTTTAAGTTGCTTGGTATTATTCGCAGGTCTTCGCCACCTTGATCCCAACCGCGAGGCTTCAAAGAAAGCGCTCCAGCACAAGAAGGAGATAGCCAAACGCCTCGGCCGCCCCTTCGTTCAGACTAATCCTTACGAGGATGTAATTGCCTGTGATGTTATAAATCCTGATCACATTGATGTCGAATTTGACTCAATTGGAGGATTGGAGACTATCAAACAAGCACTATATGAACTAGTGATACTTCCTCTGCGGAGACCTGAGTTATTTTCACACGGGAAGCTTTTGGGTCCTCAAAAAGGCGTGTTGCTTTATGGGCCACCTGGTACAGGAAAAACCATGCTTGCAAAAGCTATTGCAAGGGAGTCTGGGGCAGTTTTTATCAATGTTAGGATTTCAAATCTGATGAGCAAGTGGTTTGGTGATGCACAGAAGCTTGGTTTCTGTTCTGGTTTGCTGAATGACATTGATGGTGTTGTAGGTTTTGTTTTAATATGCCCAGTGGCTGCTGTGTTTAGCTTGGCTTATAAACTTCAGCCTTCTATTATTTTTATCGATGAGGTTGATAGTTTCTTGAGTCAACGGCGCTCTAGTGATCATGAAGCTTTATCAAACATGAAAACTGAGTTCATGGCCTTATGGGATGGATTTACTACAGATCAGAACGCACGTGTTATGGTCCTTGCTGCTACCAATCGTCCATCAGAACTTGATGAAGCAATTCTAAGAAGACTCCCTCAGGCTTTTGAAATTGGGATACCCAACAAAAGGGAGAGGGTCGAGATACTAAAGGTGATTCTGAAGGGTGAGAGGGTCGAAGACAACATTGACTATCATCACATAGCTAGCTTATGCGAGGGGTATACTGGTTCAGATCTTCTCGAGCTCTGCAAGAAAGCTGCATATTACCCAATCAGGGATCTATTGGATCAAGAAAAGACTGGAAAACAGTCTAGTTCTCCGAGGCCACTATCACAGTCAGATTTGGAGACTGCTTTCCTCTCATCAAGGAAGACGAAGGTTGTAGCGAAAGAATATGCTGGATTAGGGTCACATCAGACAGAGCCCAGCGATCCTCGGATTCAAGCAGTTTTAAACGAGCTCTCTAAGTTTGGCATTTCCCCATCAAATGTTGGATTAGAAGAAGACGACCCGTGA 1218 44.25 MGVSSETKLLQNLILYAASAALSCLVLFAGLRHLDPNREASKKALQHKKEIAKRLGRPFVQTNPYEDVIACDVINPDHIDVEFDSIGGLETIKQALYELVILPLRRPELFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIARESGAVFINVRISNLMSKWFGDAQKLGFCSGLLNDIDGVVGFVLICPVAAVFSLAYKLQPSIIFIDEVDSFLSQRRSSDHEALSNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPNKRERVEILKVILKGERVEDNIDYHHIASLCEGYTGSDLLELCKKAAYYPIRDLLDQEKTGKQSSSPRPLSQSDLETAFLSSRKTKVVAKEYAGLGSHQTEPSDPRIQAVLNELSKFGISPSNVGLEEDDP 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9929126 9933555 - ClCG05G009140.1 Cla05g00988 272478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00988 405 Gene3D - 274 354 - -
Cla05g00988 405 ProSitePatterns AAA-protein family signature. 245 264 IPR003960 GO:0005524|GO:0016887
Cla05g00988 405 SMART AAA_5 118 275 IPR003593 -
Cla05g00988 405 Pfam AAA+ lid domain 295 331 IPR041569 -
Cla05g00988 405 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 4 166 - -
Cla05g00988 405 CDD AAA 87 272 - -
Cla05g00988 405 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-LIKE 188 387 - -
Cla05g00988 405 Pfam ATPase family associated with various cellular activities (AAA) 122 165 IPR003959 GO:0005524|GO:0016887
Cla05g00988 405 Pfam ATPase family associated with various cellular activities (AAA) 189 272 IPR003959 GO:0005524|GO:0016887
Cla05g00988 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 331 IPR027417 -
Cla05g00988 405 Gene3D - 188 358 IPR027417 -
Cla05g00988 405 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 188 387 - -
Cla05g00988 405 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 4 166 - -
Cla05g00988 405 Gene3D - 80 166 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00988 K22530 ATAD1; ATPase family AAA domain-containing protein 1 [EC:3.6.1.-] - csv:101219583 707.983
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g00024 Cla05g00988 CCT
Cla01g00024 Cla05g00988 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00988 Cla-Chr5:9929126 Cla09g00557 Cla-Chr9:5145467 3.09E-80 dispersed
Cla01g00024 Cla-Chr1:161550 Cla05g00988 Cla-Chr5:9929126 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g994 Blo06g01054 Blo15g00077 . Bda07g01950 . Bpe07g01027 . Bma14g02021 Cmo16g00035 Cmo18g01364 Cma02g01138 Cma15g01011 Car02g00942 Car15g00945 . Cpe05g00585 Cpe14g00023 Bhi01g01520 . . . . Mch10g0036 . Cla01g00024 . . . . . . . . . . . . . Cme06g01170 . Blo09g00009 . Bda15g00794 . Bpe12g00340 . Bma12g01222 . Cmo02g01169 Cmo15g01074 Cma16g00030 Cma18g01333 Car16g00027 Car18g01248 Cpe09g00014 Cpe13g00326 Bhi12g00680 . . Lac11g0112 Hepe06g0815 . Lcy12g0093 Cla05g00988 Cam05g1079 Cec05g1087 Cco05g1081 Clacu05g1073 Cmu05g1023 Cre05g1097 Lsi09g00005 Csa03g01964 Chy06g01176 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002509 1 2 1 1 1 2 4 1 1 2 1 2 3 2 2 4 2 1 4 2 2 2 2 2 2 1 2 3 2 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00988 Cla_Chr05 FPKM 12.841226 11.048056 2.438565 1.99324 15.883039 16.9137 15.452269 17.853443 19.541134 18.246908