Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00993 ATGCCAGCTCTACTACGATCTCCCACCTCTATATTCCCACGTCCATCCCCTTTTCTAATTCCTTCCTTGAGAACCCTCGTCACCACTTGCAGAGCCGTCCTTTTGCCCCACTTCGGTGGTCCGGAGGTGCTCCAGCTCCGCTCCGATGTTCACGTCCCCATTCTCAAGCCTCATGAGGTCCTTGTCCATACTCGCGCAGTTTCCATCAACCCACTTGATACCCGAATGCGATCGGGTTACGGTCGCTCAATCTTTGAACCACTTTTACCGGTCATTTTGGGCCGTGACATCAGTGGTGAAGTTGCGTCTGTTGGTTCTTCGGTTCGTTCAGTTAGTGTTGGACAAGAAGTTTTTGGTGCTTTGCATCCAACTGCTGTGAGGGGTACTTACACTGATTACGCAATACTTTCGGAAGATGAATTAAGTGCTAAACCAGAATCATTGACACATGTGAAACAAACTAGCAAAAGGGCTGTCATTTTCGGCAATAATCCAACAAACAGAAACTACTACCAAAACCAATTAATCAGGCAACGGGTATTAGTAATTGGCGGTGGAGGAGCTGTAGGTTATGCTGCAGTTCAACTTTCAGTTGCCTCAGGCTGCCATGTTACAACTACTTGTGGAAGTCAAAGTATAGATAAATTACTAGCAGCCGGTGCTGAACAAGCAGTTGACTATACTACTGAGGGCATTGAATTCAAAATAAAGGGGAAATTTGATGCTGTTTTGGATACAATTGGCGTGCCAGATACGGAAAGAATTGGCATTCATCTTTTGAATAGAGGTGGACACTATATGACCCTTCAGGGCGAGGCTGCATCATTGACTGATAGATACGGATTAGTTATTGGGCTTCCTTTTGCTACAAGTGTACTGTTGCAGAAACAGTTAAAGTATAGATGGTCTCATGGAATTGAATATTGGTGGACATACATGAGGGCGGATTCCGAAGGTTTACATGAGATCAGGAGGCTATGTGAAGCTGAAAAGCTGAAGATACCGGTCGAGAAAACGTTTCCGATTACACAAGTAAGAGAGGCTCATGATGCAAAGGATAAGAACCTCATTCCTGGTAAAGTGGTGCTAGAGTTTGATTGA 1101 44.96 MPALLRSPTSIFPRPSPFLIPSLRTLVTTCRAVLLPHFGGPEVLQLRSDVHVPILKPHEVLVHTRAVSINPLDTRMRSGYGRSIFEPLLPVILGRDISGEVASVGSSVRSVSVGQEVFGALHPTAVRGTYTDYAILSEDELSAKPESLTHVKQTSKRAVIFGNNPTNRNYYQNQLIRQRVLVIGGGGAVGYAAVQLSVASGCHVTTTCGSQSIDKLLAAGAEQAVDYTTEGIEFKIKGKFDAVLDTIGVPDTERIGIHLLNRGGHYMTLQGEAASLTDRYGLVIGLPFATSVLLQKQLKYRWSHGIEYWWTYMRADSEGLHEIRRLCEAEKLKIPVEKTFPITQVREAHDAKDKNLIPGKVVLEFD 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9990611 9996779 + ClCG05G009200.2 Cla05g00993 272483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00993 366 Gene3D - 38 363 - -
Cla05g00993 366 Pfam Zinc-binding dehydrogenase 220 363 - -
Cla05g00993 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 177 340 IPR036291 -
Cla05g00993 366 Pfam Alcohol dehydrogenase GroES-like domain 57 119 IPR013154 -
Cla05g00993 366 SUPERFAMILY GroES-like 27 186 IPR011032 -
Cla05g00993 366 SMART PKS_ER_names_mod 39 363 IPR020843 GO:0016491
Cla05g00993 366 PANTHER PROTEIN AST1-RELATED 25 365 - -
Cla05g00993 366 PANTHER PROTEIN AST1-RELATED 25 365 - -
Cla05g00993 366 Gene3D - 156 335 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00993 K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial - csv:101207846 585.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00993 Cla-Chr5:9990611 Cla09g00808 Cla-Chr9:8250569 3.20E-12 dispersed
Cla05g00993 Cla-Chr5:9990611 Cla05g02539 Cla-Chr5:36747445 7.49E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g158 . . . . . . . . Cmo16g00442 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0174 Cone9ag0199 . . . . . . . . . . . . Bma07g01163 . . . . . Cma16g00410 . Car16g00374 Cpe14g00344 . . . . . . . . Cla05g00993 Cam05g1084 Cec05g1092 Cco05g1086 Clacu05g1078 Cmu05g1028 Cre05g1102 . . Chy06g01171 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010183 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00993 Cla_Chr05 FPKM 2.025057 3.054775 10.025846 10.484569 3.571502 4.780788 3.019032 1.079521 0.741349 0.0