Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00994 ATGGATTCTGACCGCCATTTTCGTACCACAAGCAGCAACAGTACCAGTTCCACCGCCGCACCCTCTAGCGAGCTCTTCATTTGCTTCACTTCTCGCTTCTCTTCTTCTTCCTCCATGAAGATCTCCTCCAAGTCCATTCTCAGTCCCGGCCGTGCTCGTGAGCCCTCCCAAATCTCCCTCTCTACTTCCCTCAGCCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGCGGTCAAGCTTCCCCCATGTTTCCCACTGGCGGGAAGAAGCGAGGCTGTGCCTTTGACAATCCGGAACCCTCTTCGCCCAAGGTCACTTGCATTGGTCAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAAATGAGGGCTAGATCGCAGAAGCGAAGGGGTAATTCGGAGGCAAGCTTTCGGAGATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCATCATCTTCTTCGTCAGAACAGTAACAACAATGGTGGAAACGGTTTCCAGCAGGAATGCTTGTCGCATCGGAACCAACGGTGGGTCCATTTGCCGTTTACGATTTGCGAGGCGCTCAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCGTGTTCCAGCGATAGGGAGAATAATAAGGAATCCAAGCCGGCGGAGAGGTCGTCGGGGACCGAGAGTTCTTGCGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTTCAGGATGGAGACGGAAAGGGGAGGGAGATCGAGCTGGTGGTTGGAGACGAAGAAACTCGAACGGAGAAGGAAAACGGAAGCCAGAGACGGCATGTTTTTGAGGGCTTAGATTTCAAAGACGAGAATGAAGTTGTGGAGGAAGAGCAATCCAGGATCAGCATTTGCATTCCGCCAAAGAATGCTTTATTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTCGCGAAACGATTCTGTGAATCTCCTGCGCCAAAAGTGGATGAAGAAGACGAGGAAGAAGAAGATGAAGACAATGAAGCGAAAAATAGACAAAATGAAGTGAAAAAAGATGAATCTGTGTCACTGCCTGTATCTTCCACTGTGACTGTAAGTAAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAAAGTGGAGCTAATTGTGAAGCTTACAAACGAGAAAGAAATGAATGAAGAATCTGTTTCTGATGCAGAAAAAGAAAAGGAAGAAGCTAATGCGGTTTTAGAGGAAGAAGAACGAGAAGAGGAAGATAATGGAGAAGAAACCACAGAAATGGCCACAGAAAACGAAATCGCTGAGCAGAAACCAGACATTACTGTGGTAAATCAGCATAATCAAGAACAACCCGTGGAAGAAGAAGATAAAATCGTTCAAGATAATCAGCAAGAAACAATGGCGATCCCAATTCAAATTCCGATTCAAACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCCGGAATCGGTCGAAGAAGACGAATCCAAGCTACCCCATGGAAGCGAACAAGACCAGAAAACAGAAGAAGACGAAAACCTGAGAGAAGAAGAAGAAGAAGAAGAAGAAGGCGAAAATGGCGAAAACCTCAGTTTACCATCATTATCAGTAGAGACAGAACCAGTTTTAGACGAAACCGAAACTGAAGTTTATTGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAGAAAGCGACGGATGAAGGAATCGGACCCGACAAGCAAAACGACGACGAATTGATGGGTCCAGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCACCGCCGGAGCCGGAGAGAAGAACACCAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAACCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGGTGCGTTCCAACCAGGGAGAAGAAGCCGGCCGGCAGAGACCCACCGCCGCCTCCGCCGCCGAAGAAACGGGAAATAAAGCCGGTGGACACCACGCAGGCGGCAGTAGTACAGCCGGCGAGATGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGTAAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCTGAGCCGATGAGATCGTCGGCTAAGCTGGCGCCAGACGCTTGCTTTTGGAAGGATCGCAAACTAGAGCCACACCGTCCGGCTACCTTCGGCATCAGCGCGGCCGAAGTTGGATTTTGA 2301 49.46 MDSDRHFRTTSSNSTSSTAAPSSELFICFTSRFSSSSSMKISSKSILSPGRAREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRGNSEASFRRSESVVQSSQMNGNDQQFSSHHNHHLLRQNSNNNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRENNKESKPAERSSGTESSCGTVFARWLVAVQDGDGKGREIELVVGDEETRTEKENGSQRRHVFEGLDFKDENEVVEEEQSRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPAPKVDEEDEEEEDEDNEAKNRQNEVKKDESVSLPVSSTVTVSKEEEEEEEEEEERKVELIVKLTNEKEMNEESVSDAEKEKEEANAVLEEEEREEEDNGEETTEMATENEIAEQKPDITVVNQHNQEQPVEEEDKIVQDNQQETMAIPIQIPIQTHCEPEMAQDAEKPESVEEDESKLPHGSEQDQKTEEDENLREEEEEEEEGENGENLSLPSLSVETEPVLDETETEVYWNWEEEEEEEEKATDEGIGPDKQNDDELMGPEEDQSKERETPPPEPERRTPTETSVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKPAGRDPPPPPPPKKREIKPVDTTQAAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACFWKDRKLEPHRPATFGISAAEVGF 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10009126 10011835 + ClCG05G009205.1 Cla05g00994 272484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00994 766 MobiDBLite consensus disorder prediction 390 421 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 476 621 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 581 613 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 338 352 - -
Cla05g00994 766 Coils Coil 339 359 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 215 237 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 40 78 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 658 681 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 334 454 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 495 524 - -
Cla05g00994 766 Coils Coil 377 436 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 40 178 - -
Cla05g00994 766 PANTHER CHLOROPLAST PROTEIN HCF243 7 766 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 136 178 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 1 21 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 557 580 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 525 542 - -
Cla05g00994 766 Coils Coil 515 535 - -
Cla05g00994 766 MobiDBLite consensus disorder prediction 422 442 - -
Cla05g00994 766 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 7 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00994 - - - csv:101220770 1097.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00994 Cla-Chr5:10009126 Cla10g01943 Cla-Chr10:35263777 1.29E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00994 Cla_Chr05 FPKM 8.732316 7.681952 5.55509 7.347321 5.759921 4.506391 5.886517 8.87334 9.456247 13.143357