Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00996 ATGGACCCAATCAATGCCTCTCTTCATCAATCTTCTCCTTCAAGCGATGAGCCGCTCATTGATGAAGCTTTGGATCTTTTAGAGCTTTTTTGGTTCTTTGATAATCTGCTTGTTAGGAGGAACCCCAGGATGTCGATCTCTCGTTCTGATCCTTGTCTCTCTAAAGTTGCCCACCAGGTGTTTGTTGAAAGTCCTCCTACTAATCTCTGCTCATCTGCTTTGGATGGGGGTGTTTCGCTGGGGAATGGTGGTAGTATACGTCGGAATCTGCTTCGGACGCCGTCTTTACCATCCCGTATGGATGGAGGCGAAGGAATTCGAGAGAAAGGAAATGGTTCTAGGCCATTGGTGGAGGAGCATGGTGTGCTTGTTGAAACTCCTGTTGATAGTGTTTGCTCATCTGCTTTGGATATGGATGTGTCGATTGGAAATGGTGGTGGTAAATGTAGGAATCTCCTCCGAACACCGTCGTCCCCTTTGGACCGAGAGGAAGGAATTCAAGTGAAAGGAAATGATACTAGGCCATTATCTGAGCATGGTGTGTTTGCAGAACGTCCTGCTGGTAATGCCTGCTTATCTACTTTGGATATGGATGTTTCGCCGGGAAATAGTGGCGGTAAACGTCGGAGTCTGCTCCGAATGCCATCATTACCATCCCGTGTGGAACGAGAACAAGGTATTCGAGACAAAGGGAATGGTTCCAAGCCATTAATAGAGCATGGTTTGCTTCAAAAACCAGCCAAGCCACCTTATGTAGAGAGGAAAGAAGAAGCAACTCGCAGCAAAGAAAGTGGCAGCACTCGGAGGAGCAAATCGGCAAGGAAACCACAGCATGGTAATCTGCTAAGAACACCATCTTTGCCACCATGTATAGGGAGGGAAAAGGAATTTGGAGAAAAGGAAGCTGCTGCTAGAATCAGAAACTCTATTCAACCAAACCTTTCTGAATTCTTTCCCACAAGACAAGAGATTCTTGACAAGAATTTCAGCCTCCCAATGTGTCGAATCCCAACAAGCAGTGACGAAATTTGGCACCAATTTCTCATCCAAATGAGGAAGAGAAGAAGCCAAAGTGAACTTGAATCAGAAGAACTGCAAGGTTTCAAGGACTTGGGATTCACATTTGACAAAAAAGATATAAACCCAACAGTGGTTGACATAATTCCAGGCTTGAGAGAGAAAAAGGTGGAAGAGTTTGAGAGTGAAAGAACTAGAAGGCCTTATCTTTCTGAGGCTTGGATGCTCCAAACTCATCTCCTTCCCCCAATTCCAAAATGGGATTCTAGAAAATCTGCAGAAGACATGAAACAACAAATCAAGTTTTGGGCTAGAGCTGTTGCTTCTAATTGCAGGCTACCCAAGACTCAATGGAATTGGATTGGTGTCCAAATGAATCTCACTTTATTGGAGAAAGTACAGTAA 1422 44.59 MDPINASLHQSSPSSDEPLIDEALDLLELFWFFDNLLVRRNPRMSISRSDPCLSKVAHQVFVESPPTNLCSSALDGGVSLGNGGSIRRNLLRTPSLPSRMDGGEGIREKGNGSRPLVEEHGVLVETPVDSVCSSALDMDVSIGNGGGKCRNLLRTPSSPLDREEGIQVKGNDTRPLSEHGVFAERPAGNACLSTLDMDVSPGNSGGKRRSLLRMPSLPSRVEREQGIRDKGNGSKPLIEHGLLQKPAKPPYVERKEEATRSKESGSTRRSKSARKPQHGNLLRTPSLPPCIGREKEFGEKEAAARIRNSIQPNLSEFFPTRQEILDKNFSLPMCRIPTSSDEIWHQFLIQMRKRRSQSELESEELQGFKDLGFTFDKKDINPTVVDIIPGLREKKVEEFESERTRRPYLSEAWMLQTHLLPPIPKWDSRKSAEDMKQQIKFWARAVASNCRLPKTQWNWIGVQMNLTLLEKVQ 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10024074 10026255 - ClCG05G009220.2 Cla05g00996 272486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00996 473 MobiDBLite consensus disorder prediction 249 270 - -
Cla05g00996 473 MobiDBLite consensus disorder prediction 197 292 - -
Cla05g00996 473 PANTHER - 151 451 - -
Cla05g00996 473 PANTHER - 11 161 - -
Cla05g00996 473 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 11 161 - -
Cla05g00996 473 MobiDBLite consensus disorder prediction 91 113 - -
Cla05g00996 473 PANTHER SERINE/ARGININE REPETITIVE MATRIX PROTEIN 151 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00996 - - - bhj:120067383 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02330 Cla-Chr1:37086001 Cla05g00996 Cla-Chr5:10024074 1.24E-08 dispersed
Cla03g00700 Cla-Chr3:8494539 Cla05g00996 Cla-Chr5:10024074 5.79E-16 dispersed
Cla05g00996 Cla-Chr5:10024074 Cla10g01939 Cla-Chr10:35230215 4.63E-09 dispersed
Cla05g00996 Cla-Chr5:10024074 Cla07g00247 Cla-Chr7:2730389 3.32E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car16g00373 Cpe14g00343 . . . . . . . . Cla05g00996 Cam05g1087 Cec05g1095 Cco05g1089 Clacu05g1081 Cmu05g1031 Cre05g1105 . . Chy06g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012894 0 4 0 0 0 1 1 1 1 1 1 1 0 1 1 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00996 Cla_Chr05 FPKM 0.08916 0.104678 0.115375 0.067298 0.040918 0.151775 0.057275 0.272979 0.275066 0.148631