Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g00998 ATGCTCAATATTTCGTTCGTTGAATTGCGTAATCGGACGAAGAAGAGGATCCTTCGAGTTTTGTTTTACCATATAATAAGTTTATGTGCGAGTAGGACGACGTTTGTGTTATCAATTTTATTTGTAATTTTTGTCATGCGATTGTCGTCGGAATCAGTTTCGTCGTCATTGAAGCAGAGTGGGAATCGGTCTGGGTCTAGGCTTAAGAAGAAGCACAAGAGGCTTGATGCCATATGCGAGAAAGAGTATAGTAGAAACCATGGCGATGTGAATGAGAATGTTAGTGGGTTGGGGACTGGGGAGGCTGACCTTGGGCTTCGACGGAGCAGCCGTGTTCGTCGGGCCCCAGTCTTGCTTGATGCTTCCCCTATGCCAAGGAAGAAGCGGCGGATGGTTCATGGGAATGGAACTTTGGGTGTTAAAACGAGTGCTAACACTCTGCCGCAGTTGAGAGATGATTTGAATGATGAGGCACAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAACCGAAATTTGGGGATTAGAGTGGACAAAGGTGTTCGGGCTAGCAGGAAAAGGAAACTTTTTGATGAAATTATTAATGTGGAAGTAAGAAGTAGTGTAATGAGGATGGATTTGGATGAGGCAAAAGGAAAAATGGAATACGGGGAATCTATGGTTGGAAGGTCTAACAGATTGACGAGGAGGTTTGGAGTGACGAATGATCCAATTAAAACAGAAAAGGAGGTGAAGTCTCCTCAAATTAAGGATGATTGTTACAGGGAAGACATTTTGGAAATCAATAATGAAGATACAGAGGAGGAGGAAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGAAGGCAAAGAAGCCACGACTGCTAACAATGAGAGAGGGGAGGGTGTTTTGCCTTTGGAAAATGAAATGGATGATGAAAATGTGAAGGCAGTGGATGATGCTGTTACTCAGGTTGTTGAAAAATTGGACAAAGAAACTTTGAGTTCTTTGCACGCAGATGAGGCTTGTAGTGGTGATCATAATGAAGAACCAGCCAATGAGGTGGAGAATGCAAACAATGGTGAGATACAGCTAGAAGAATTAACACAGCTAAATGAAGGTGTGAATGAAATTCATGATGTAGAAGCTGCTGTAGTTTCAACAAATGAAGTGGTAGGTGGAAGGTCTTGCAACGAGAAAGCTGTTGATTTGGGCAAGTTTGCTGAAAAATCTAGGCAAGATGGTGTTGATTTAAATTTAAAGAAGTTTGCAGACAGTTCCACAGGTATGTTGGGTAAGGCTCGCATTAAAGAGGGCAGAAGGTGTGGATTGTGTGGAGGAGGAATTGATGGTAAACCTCCCAAGAAGTTGGTTCAAGATTCTGGTGAGAGTGAACATGAAACATGTAGTGGCTCTTCAGCTTCAGAGGAACCAAATTATGACAAGTGGGATGGTTTTGGCGATGAACCTGGATGGCTTGGACGCCTCTTAGGTCCTATTAATGATCGTTATGGCATTGCTGGTATATGGGTCCATCAACACTGTGCAGTTTGGAGCCCCGAGGTTTATTTTGCTGGATTGGGATGCTTGAAAAATGTAAGGGCTGCTCTTTGCAGGGGAAGAGCATTAAAATGCACTCGGTGTGGGAGACCTGGAGCAACCATCGGATGTCGTGTTGATCGATGCCCAAAAACTTACCACTTGCCTTGTGCACGTGCTAATGGTTGCATATTTGATCACCGCAAATTTCTCATAGCTTGCACAGATCATCGCCACATCTTCCAACCTCACGGCAATCAATATTTAGCTCGTATAAAGAGATTAAAGGCCAAGAAAATGAAATTGGAAATAAAAAAGCAATCAAATGACGCTTGGCGAAGGGATATTGAGGCTGAAGAAAAGTGGCTGGAGAACTGTGGGGAAGATGAAGAGTTTTTGAAAAGAGAGAGTAAGAGACTTCATCGAGATTTGGTAAGAATTGCACCTGTATATATTGGTGGGTCAAACTCAGAAGGAGAGAACTTGTTTCATGGTTGGGAGTCAGTTGCTGGGCTTCAAGGTGTCATCCAATGTATGAAAGAAGTAGTATTCTTACCACTTTTGTATCCTGAGCTTTTTGATCGCTTTGGGATCACACCTCCTAGAGGTGTTCTTTTGCATGGATATCCTGGAACTGGTAAAACACATGTTGTTCGAGCACTGATTGGTTCTTGTGCTCGTGGAGATAAACGGATAGCATATTTTGCTCGTAAAGGAGCCGATTGCTTAGGGAAATATGTTGGTGATGCAGAACGTCAGTTAAGACTTCTATTTCAAGTTGCAGAGAAATGCCAACCTTCTATTATATTTTTTGATGAGATAGATGGATTGGCACCTTGTCGTACAAGGCAGCAAGATCAAACGCATAATTCAGTTGTGTCTACATTGCTTGCTCTATTAGATGGTCTAAAATCTCGGGGGTCTGTTGTAGTTATTGGTGCCACAAACCGCCCTGAGGCAGTTGATCCAGCTTTAAGGAGGCCTGGGAGATTTGACCGGGAGATTTATTTTCCTTTGCCATCGGTTGAAGATAGGGCTGCTATTCTCTCCCTTCACACTCAAAGGTGGCCAAAGCCAGTTGATGGACCCTTACTCCAGTGGATTGCTAGAAAAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACCCAAGCAGCCATGAGTGCTTTGAAAAGAAATTTTCCTCTTAAAGAAGTCCTGTCAGCTTCTGGGGAACAAGTTTCGAGAGATAACCACCCTCCTCTTCCGTCCATTTTAGTGGAGGAGCGAGATTGGTTAGAAGCTTTATTATATTCTCCACCTCCATGCTCACGTAGAGAAGCAGGGATGGCTGCTAATGATGTGGCATCTTCTCCTCTTCCCTTCCATCTCATTCCTTGTCTGCTTCAACCACTGTCAACTTTACTTGTTTCCCTTTATCTCGATGAACGCATCTGCTTGCCAACTAATCTTTTCAAAGCTGCAACTTTAATTAAAAGTGTCATCGTTAGTGCTTTGGATGGAAGGAAAATTGTCACTAGTTGCTGGTGGTCACATGTTCATGATTTTGTTCAGGATGCTGATATTGCAAATGAGATAGAGGTAAAGCTGCAGGGTTCTGGAGTGTTACTTGAGGATTCTACTTTTGGCGGTTCTGGTGTTCTCAACAACACAAGCAGTGAAGGTTCCAAGTTTGAAAATGTAGGTCATCATGGTGGCCCACCCTCTACCGTGGTAGAGCACACATCATTCACCTGGGGAAATAAGTCTGGCTTTCGAATTTTGATTGCTGGGAATCCCAGATCTGGACCAAGGCATCTTGCCTCTTGTCTTCTTCACTGTTATATTCAACATGTTGAAATTCGAAAGGTTGATATAGCTACAATTTCACAAGAAGGTCATGTGAATTGCTCTAGCATGGGGTCGTGTCTGGTGTTCATGCCAAGAATTGACTTGTGGGCTATTGAGACACAAAGTCAAACGTCTGAGGAGTGTGATTTTTATCTGAATGAGGATCAGTATCTTGCGGATGGAAATATTGTCAAAGACGCCCACCTTGGTGGAAGGGAAAACCATGGTTATTCAGACCAATGCAAATCAACTAAGAGGACTGGACTTCAAGACGATTCTCTGTCTAGTGCTTCATATGCTTGGAGTTCATTTGTTGAGCAAGTTGAATCGCTATCTACTCCCTTGATGATTTTGATATTTCTCCTCTTTGTTGATATTGGACTCATTGAAGGGAGGCGGATCCAAAAATATGGTGCAGAGAAACCAAACTGGGCCACATCAGAAGTTCCATTTTTGCTACTTCCACAAGAGATAAGGCAGTTCTTCAGGAATGACTTGTCAATTTGTCGGCCAACTACTTCGGAGCATTCGGTACCTAGGTTCTCTGTCCAGATTGATGGAGTTTTCGACCATGACATGGTAATCAATCATTCTGCTGCAGAATTATCAAGGGACATAGTGAAACTGCTTGTTCATTTGATTCACCAAAAGTCTCACACCAAAACATCAGCATGCACAAAGAACCAAGTTTCTGTAATCCAAGGTGAGAGTAATGCTGCAAATCAGCAAATAGATAAAGGAACTGCCAGCGAGCACAATGGAGAAAAGAAGTCTCCTGATGTGTCTTCTGTTAGAATTGCACCACTACCTGGCAGTAAAACCATGAGAGTGAAATCAAACTTGATTTCAGTAATATCTACTTTTGGCTATCAAATTCTGCGATACCCCCATTTCGCTGAGCTTTGTTGGGTGACTTCAAAGTTGAAAGAAGGCCCCTACGCAGACGTTAGTGGACCCTGGAAGGGATGGCCATTCAATTCTTGTATTATTCGCCCCATGAGCACATTGGAGAAGGTAGCATCAAGCAGCTTGAGTAATGGAAAATCTAAAGAAATTTCGGGTTTGGTAAGAGGCTTGATTGCTGTTGGTTTATCAGCAATCAGAGGTGCCTACACATCCTTAAGGAAAGTCTCTTTTGATGTGCGATTGGTACTTGAACTCCTAGTTGAACAGATAAATGCAAAAATTAATTCCGGGAAAGACCAGTATCAATATTTTCGCCTTCTATCACAAGTTGCGTATCTGGAAGATGTAGTTAATAGCTGGGCCTTCACTCTGCAAAGCTTAGAACATGACTCGAGAACAACGGAAACGTCAAAGAATCACACTTCTGGTGGTAATGAGATTCAGTGTGAGAAAAACGAACCCATTATATCCAACAAAGGCTCTCTTACAAATGAAATTCCAGAAGTCAGTTGTCAGGAACCTGCTGTTGAGGAGGAAGTTGTAGCCATTGATTCCTTGGTAGATGGAGATTTGAATCATTCTAATTCCAAGGATACTACATTCGTATCAGGACATGGAGAGAGGAATTTTGGCATAAAAAATTCAGTCTCTAACGAGTCCCATGACAATGCTGCTGCTGTTGACCAATTAGCTGAAAATATTCCATTGAAGCACAATGAGACAACAGTAGTTGCACCGGAAAATTTGGTCAATGATAGAAACGGCAAATCGGTTAAAGCACCATTAAATTTGGGAGCAGAATCAATAGTCAATTTGGAACATAATCATCCAAATTCAAGTGAGTTATGTGGTGATGAAATGCCGAGCTGCACAAAACCCTGCGGCAACAGTAATGAAGTTTGTTCCGCCTTAGAAAATGGTTGCAAACGTGACAATAGTAAGCCCGACTCAAATGACTGTGAAGTGAATGCTCACTCCTCTCCGAGCAGAACTGGCCTCTCTACCAACTCTGCACTAGTATGCTCTATTCGGTGCTGCACTGGTTGTTTAAACGTCCTCTACAGCGTGACAAAAACTATTATTCACAAGGAATTGGGATCAAATCGAAATAATTGGACTGTAGAGGATGTTCATGATAACGTTGTGGCACTTTCAGTTGACCTTCTTGCAGCAGTAAGACGGGCATTTCTTGATGGAAACGACACTCGTGTATTTGACAATAGACAAATGGGAGGAAATGACAGGTTTAAATCTTCGGACTCGAGAAGTTGTGATTGCAAAAGTTCAAAAGACATGGTATTTAATGGAGTGGAATGTATTTGTCACTGTGAAAACGAAAGTTTGAGTGAAAAAGAAAAGGCCTCTCCTTATTCTGAAATGGGGATTGACCCCAACTTTATATCCAGAGATGGTGTATTGGTTAGTGTAGATCCCAAAAAGAATGCTTCGTTTCATTGTAAATTGGAGACTTTGTGCCTCTGTTCTCTTACAGAGTTGATAGTAATGGCAAATAAGCCTTTAAATTGA 5850 42.55 MLNISFVELRNRTKKRILRVLFYHIISLCASRTTFVLSILFVIFVMRLSSESVSSSLKQSGNRSGSRLKKKHKRLDAICEKEYSRNHGDVNENVSGLGTGEADLGLRRSSRVRRAPVLLDASPMPRKKRRMVHGNGTLGVKTSANTLPQLRDDLNDEAQGNWRSRLRSRNRNLGIRVDKGVRASRKRKLFDEIINVEVRSSVMRMDLDEAKGKMEYGESMVGRSNRLTRRFGVTNDPIKTEKEVKSPQIKDDCYREDILEINNEDTEEEEEEEGEEEEEEEEEEGEGEEEEEEEEEEVVVVEGKEATTANNERGEGVLPLENEMDDENVKAVDDAVTQVVEKLDKETLSSLHADEACSGDHNEEPANEVENANNGEIQLEELTQLNEGVNEIHDVEAAVVSTNEVVGGRSCNEKAVDLGKFAEKSRQDGVDLNLKKFADSSTGMLGKARIKEGRRCGLCGGGIDGKPPKKLVQDSGESEHETCSGSSASEEPNYDKWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHIFQPHGNQYLARIKRLKAKKMKLEIKKQSNDAWRRDIEAEEKWLENCGEDEEFLKRESKRLHRDLVRIAPVYIGGSNSEGENLFHGWESVAGLQGVIQCMKEVVFLPLLYPELFDRFGITPPRGVLLHGYPGTGKTHVVRALIGSCARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRQQDQTHNSVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILSLHTQRWPKPVDGPLLQWIARKTAGFAGADLQALCTQAAMSALKRNFPLKEVLSASGEQVSRDNHPPLPSILVEERDWLEALLYSPPPCSRREAGMAANDVASSPLPFHLIPCLLQPLSTLLVSLYLDERICLPTNLFKAATLIKSVIVSALDGRKIVTSCWWSHVHDFVQDADIANEIEVKLQGSGVLLEDSTFGGSGVLNNTSSEGSKFENVGHHGGPPSTVVEHTSFTWGNKSGFRILIAGNPRSGPRHLASCLLHCYIQHVEIRKVDIATISQEGHVNCSSMGSCLVFMPRIDLWAIETQSQTSEECDFYLNEDQYLADGNIVKDAHLGGRENHGYSDQCKSTKRTGLQDDSLSSASYAWSSFVEQVESLSTPLMILIFLLFVDIGLIEGRRIQKYGAEKPNWATSEVPFLLLPQEIRQFFRNDLSICRPTTSEHSVPRFSVQIDGVFDHDMVINHSAAELSRDIVKLLVHLIHQKSHTKTSACTKNQVSVIQGESNAANQQIDKGTASEHNGEKKSPDVSSVRIAPLPGSKTMRVKSNLISVISTFGYQILRYPHFAELCWVTSKLKEGPYADVSGPWKGWPFNSCIIRPMSTLEKVASSSLSNGKSKEISGLVRGLIAVGLSAIRGAYTSLRKVSFDVRLVLELLVEQINAKINSGKDQYQYFRLLSQVAYLEDVVNSWAFTLQSLEHDSRTTETSKNHTSGGNEIQCEKNEPIISNKGSLTNEIPEVSCQEPAVEEEVVAIDSLVDGDLNHSNSKDTTFVSGHGERNFGIKNSVSNESHDNAAAVDQLAENIPLKHNETTVVAPENLVNDRNGKSVKAPLNLGAESIVNLEHNHPNSSELCGDEMPSCTKPCGNSNEVCSALENGCKRDNSKPDSNDCEVNAHSSPSRTGLSTNSALVCSIRCCTGCLNVLYSVTKTIIHKELGSNRNNWTVEDVHDNVVALSVDLLAAVRRAFLDGNDTRVFDNRQMGGNDRFKSSDSRSCDCKSSKDMVFNGVECICHCENESLSEKEKASPYSEMGIDPNFISRDGVLVSVDPKKNASFHCKLETLCLCSLTELIVMANKPLN 1949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10050366 10059804 - ClCG05G009240.1 Cla05g00998 272488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g00998 1949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 607 IPR013083 -
Cla05g00998 1949 SMART AAA_5 727 868 IPR003593 -
Cla05g00998 1949 MobiDBLite consensus disorder prediction 262 320 - -
Cla05g00998 1949 CDD AAA 727 866 - -
Cla05g00998 1949 Pfam ATPase family associated with various cellular activities (AAA) 731 866 IPR003959 GO:0005524|GO:0016887
Cla05g00998 1949 Gene3D - 867 959 - -
Cla05g00998 1949 PANTHER AAA DOMAIN-CONTAINING 103 1944 IPR045199 -
Cla05g00998 1949 MobiDBLite consensus disorder prediction 469 495 - -
Cla05g00998 1949 MobiDBLite consensus disorder prediction 262 300 - -
Cla05g00998 1949 ProSiteProfiles Extended PHD (ePHD) domain profile. 485 605 IPR034732 -
Cla05g00998 1949 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 103 1944 - -
Cla05g00998 1949 ProSitePatterns AAA-protein family signature. 836 854 IPR003960 GO:0005524|GO:0016887
Cla05g00998 1949 Pfam PHD-like zinc-binding domain 526 605 - -
Cla05g00998 1949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 693 924 IPR027417 -
Cla05g00998 1949 Gene3D - 692 963 IPR027417 -
Cla05g00998 1949 MobiDBLite consensus disorder prediction 1381 1404 - -
Cla05g00998 1949 Pfam AAA+ lid domain 892 924 IPR041569 -
Cla05g00998 1949 Coils Coil 256 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g00998 - - - csv:101208571 3107.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00998 Cla10g00660 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g00003 Cla-Chr4:78309 Cla05g00998 Cla-Chr5:10050366 9.26E-31 dispersed
Cla05g00998 Cla-Chr5:10050366 Cla10g01441 Cla-Chr10:29613363 3.30E-54 dispersed
Cla05g00998 Cla-Chr5:10050366 Cla04g00912 Cla-Chr4:24108654 2.12E-42 transposed
Cla05g00998 Cla-Chr5:10050366 Cla10g01920 Cla-Chr10:35062114 1.34E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g00998 Cla_Chr05 FPKM 0.398523 0.0 0.883658 0.561392 3.319773 3.234359 3.361835 1.045013 1.006274 1.030788