Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01002 ATGAGATCTCTACTGGTCTCAGAGGTGATGGTGGTTAATCTTGTCAAACCGTCTTTCCTCAAATGGATATTATTGAGTTGCTTGCTTTCTTTCTCGCTGGCTCTGAAACAGACTAATAAAGTCTGTGATTCAAAAGATTTACTGGCATTGAGGGGCTTTGTGAATAGCCTTGCAAATAGTTCTGTTCTCTCTGTATGGTTAAATGAATCCAACTGCTGCAATTGGGATGGTGTGGATTGTGGATATGATGGCAACAGCTCGCGCACTAACAGAGTTACCAGGTTAGAGCTGCCTAATATGAATCTGAAAGGCAAGATTTCACAATCACTTGGTGGTTTAGATCAGTTAATTTGGCTGAATCTATCATACAATCAGCTTGAAGGTGTATTGCCAACAGAACTCTCAAGCTTGAAGCAACTCCAGGTTTTGGATTTGAGTTACAATAAATTGTCAGGACCAGTCACCAATGCAACTTCAGGATTGAAATCTGTTCACGTTCTGAATATTTCAAGCAATTCATTCATTGGGGATTTTCCCCAGCTTGTGGGTTTTCAAAATCTTGTTGCCTTCAACATAAGTAACAATTCTTTCACGGGCCGGTTAGCTTCACAGATTTGCAATTCCTCCATCATGATTCAGGTTGTTGATATTTCACTGAACCGAATATCTGGAAATCTTCAAGGTTTGGACAATTGCAGCAAATCTCTCAAACATTTTCGTGCAGACAGTAACTTCCTTACTGGCCATCTGCCAGATTCGTTGTATTCATTATCATCCATGGAGTATTTCTCAATCCCTGGGAACAGCTTCTTTGGCCAATTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAGTATTTGGAAACAAATTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAACTACAGGAGTTAGTTGCACACTCCAACTTGTTCTCTGGATTATTGCCTTCATCTCTGTCATTGTGCTCAAAGCTCAGAGTGTTTGATCTTAGAAATAATTCTTTAACTGGTACTATAGATCTCAATTTTTCTAGGCTACCAAATCTTCAAATGCTTGATCTAGCCTCGAATCACTTTTCTGGGGCCCTACCAAATTCTCTATCTGATTGCCATGAACTGAAAACTCTTAGCCTTGCCAAAAACAAGTTAACTGGTCAAATTCCTCGAAATTATGCAAAGCTTTCCTCTCTGTCCTTTCTATCTTTGTCAAACAACAGTATCATAGACTTGAGTGGTGCACTATCTATTTTACAAAATTGCAGAAATCTGACTGTTCTTATTCTTACAAAGAACTTTCGTAATGAGGTACTTCCACAGAGTGAAACTGTTTTCAACAACTTGATGCTTTTGGCATTTGGTAACTGTGGTCTGAGAGGACAAATTCCAGGTTGGTTAATAGGTTGCAAGAAATTAAGCATCCTCGACTTGTCGTGGAATCACTTAAATGGAAGTATCCCTGCTTGGATTGGTCAGCTGGAAAATTTGTTTTATTTGGACTTATCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGCTTGACACAGATGAAAGCACTAATTTCCAGAAACGGCAGCTTGTCGGGTTCCACATCATCTGCTGGAATCCCCCTTTTTGTCAAACGAAATCAAAGTGCTACTGGTTTGCAATACAACCAAGCGTCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATTAATGGAACTATTTTTCCGGAAATTGGCAGATTAAAATGGCTGCATGTCTTGGATTTGAGTAGGAATAATATTACTGGGTCCATACCGAGCACCATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCGAATAATGATCTTTATGGACAAATTCCACCATCACTCAACAAGCTCACCTTCTTGTCAAAGTTTAGCGTGGCAAATAATCACTTGGAGGGACCAATTCCTAATGGAGGCCAATTCCTAAGCTTTCCCAGCTCCTGCTTTGATGGTAATACAGCACTTTGTGGGGAAATTGACAACCCTTGTCATTCTGTTGATGGGTTAGAAACAAAACCCGAAACCAACAATTACTCAAAGAGAAAAGTTAATAGAAGCATCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAATCCTCCTGCTCCTTACAGTGGTTTTACTCAAAATGTCCAGGAAAGATGTTGGAGATCGACGAAATAACAGGTTTGATGAGGAATTTGACAGGCCTGACAGGTTATCTGGAGCTCTTGGATCGTCAAAGTTGGTGCTCTTTCAGAATTCAGAATGCAAGGATCTTACAGTTGCAGAGTTGTTAAAAGCTACTTGCAATTTCAACCAAGCGAACATAATAGGCTGTGGTGGATTTGGCCTGGTTTACAAAGCCAGCCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCACAGCATAAGAATCTTGTTTCTCTTCAAGGTTACTGCAAACATGGAAATGACAGGCTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTACTGGCTTCACGAGGTTGTTGATGATGATTCAATACTAAAATGGGAAGCAAGACTCAAAATCGCACAGGGTGCTGCTCATGGATTGGCTTACTTGCATAAGGAATGTCAGCCCAACATAATCCACCGAGATGTAAAATCAAGCAACATACTTCTAGATGACAGATTTGAGGCTCATTTAGCTGATTTTGGCCTTTCAAGATTACTCCGGCCATATGACACTCATGTTACGACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAGACATTAACTGCAACTTGCAGGGGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACTGGTCGGAGGCCTGTAGAGGTATGCAAAGGTAAAGCCTGCAGGGATCTGGTGTCTTGGGTGATTCAAAAAAAATCAGAGAAGAGAGAAGAGGAGATTATTGATCCTGCAATTTGGGACACTAATAGCAAAAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCATGGCTAGATGGTGTTACGTTGTAG 3171 40.37 MRSLLVSEVMVVNLVKPSFLKWILLSCLLSFSLALKQTNKVCDSKDLLALRGFVNSLANSSVLSVWLNESNCCNWDGVDCGYDGNSSRTNRVTRLELPNMNLKGKISQSLGGLDQLIWLNLSYNQLEGVLPTELSSLKQLQVLDLSYNKLSGPVTNATSGLKSVHVLNISSNSFIGDFPQLVGFQNLVAFNISNNSFTGRLASQICNSSIMIQVVDISLNRISGNLQGLDNCSKSLKHFRADSNFLTGHLPDSLYSLSSMEYFSIPGNSFFGQLSMELSKLSRLKSFIVFGNKFSGELPNVFGNFSELQELVAHSNLFSGLLPSSLSLCSKLRVFDLRNNSLTGTIDLNFSRLPNLQMLDLASNHFSGALPNSLSDCHELKTLSLAKNKLTGQIPRNYAKLSSLSFLSLSNNSIIDLSGALSILQNCRNLTVLILTKNFRNEVLPQSETVFNNLMLLAFGNCGLRGQIPGWLIGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISRNGSLSGSTSSAGIPLFVKRNQSATGLQYNQASSFPPSIYLSYNRINGTIFPEIGRLKWLHVLDLSRNNITGSIPSTISEMENLETLDLSNNDLYGQIPPSLNKLTFLSKFSVANNHLEGPIPNGGQFLSFPSSCFDGNTALCGEIDNPCHSVDGLETKPETNNYSKRKVNRSIILCLTVGAAAAILLLLTVVLLKMSRKDVGDRRNNRFDEEFDRPDRLSGALGSSKLVLFQNSECKDLTVAELLKATCNFNQANIIGCGGFGLVYKASLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEVVDDDSILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIIDPAIWDTNSKKQILEVLGITCKCIDQDPRKRPSIEEVSSWLDGVTL 1056
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10080430 10083600 - ClCG05G009270.1 Cla05g01002 272492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01002 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 456 524 - -
Cla05g01002 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 568 625 - -
Cla05g01002 1056 SMART serkin_6 780 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01002 1056 ProSiteProfiles Protein kinase domain profile. 780 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01002 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 282 446 - -
Cla05g01002 1056 Pfam Leucine rich repeat 354 414 IPR001611 GO:0005515
Cla05g01002 1056 Pfam Leucine rich repeat 567 622 IPR001611 GO:0005515
Cla05g01002 1056 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Cla05g01002 1056 SMART LRR_typ_2 137 160 IPR003591 -
Cla05g01002 1056 SMART LRR_typ_2 353 376 IPR003591 -
Cla05g01002 1056 SMART LRR_typ_2 499 523 IPR003591 -
Cla05g01002 1056 SMART LRR_typ_2 609 633 IPR003591 -
Cla05g01002 1056 SMART LRR_typ_2 401 424 IPR003591 -
Cla05g01002 1056 SMART LRR_typ_2 113 136 IPR003591 -
Cla05g01002 1056 SUPERFAMILY L domain-like 42 322 - -
Cla05g01002 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 40 165 - -
Cla05g01002 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 456 524 - -
Cla05g01002 1056 Gene3D Ribonuclease Inhibitor 43 160 IPR032675 -
Cla05g01002 1056 PRINTS Leucine-rich repeat signature 609 622 - -
Cla05g01002 1056 PRINTS Leucine-rich repeat signature 502 515 - -
Cla05g01002 1056 CDD STKc_IRAK 786 1047 - -
Cla05g01002 1056 Gene3D Ribonuclease Inhibitor 161 400 IPR032675 -
Cla05g01002 1056 Gene3D Transferase(Phosphotransferase) domain 1 856 1055 - -
Cla05g01002 1056 PANTHER PHYTOSULFOKINE RECEPTOR 2 621 1053 - -
Cla05g01002 1056 ProSitePatterns Protein kinases ATP-binding region signature. 786 808 IPR017441 GO:0005524
Cla05g01002 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 282 446 - -
Cla05g01002 1056 ProSiteProfiles Leucine-rich repeat profile. 611 634 IPR001611 GO:0005515
Cla05g01002 1056 Pfam Leucine rich repeat N-terminal domain 44 80 IPR013210 -
Cla05g01002 1056 SUPERFAMILY L domain-like 555 671 - -
Cla05g01002 1056 ProSiteProfiles Leucine-rich repeat profile. 403 425 IPR001611 GO:0005515
Cla05g01002 1056 SUPERFAMILY Protein kinase-like (PK-like) 761 1051 IPR011009 -
Cla05g01002 1056 Gene3D Ribonuclease Inhibitor 416 530 IPR032675 -
Cla05g01002 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 568 625 - -
Cla05g01002 1056 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672|GO:0006468
Cla05g01002 1056 Pfam Leucine Rich Repeat 501 520 IPR001611 GO:0005515
Cla05g01002 1056 Gene3D Ribonuclease Inhibitor 567 678 IPR032675 -
Cla05g01002 1056 Gene3D Phosphorylase Kinase; domain 1 749 855 - -
Cla05g01002 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 165 - -
Cla05g01002 1056 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 621 1053 - -
Cla05g01002 1056 SUPERFAMILY L domain-like 245 526 - -
Cla05g01002 1056 Pfam Protein kinase domain 781 1048 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01002 Cla-Chr5:10080430 Cla11g00084 Cla-Chr11:1098058 0 dispersed
Cla05g01002 Cla-Chr5:10080430 Cla01g01963 Cla-Chr1:34272640 6.73E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80560 PF00069 Pkinase 5.50E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01002 - - cmo:103496072 1930.22