Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01005 ATGATTACTTTGGTCTCTGTTATGTTTGCTGGTCATCTTGGTGAACTTGAGCTTGCTGCTGCCACTCTTGCAAATACTTTGGCTAGTGTCACTGGCTTTTCTTTCATGACAGGACTGAGCGGAGCGCTTGAAACACTTTGCGGGCAAGCGTTTGGTAGGAAGTTTCATGGGAAGATGGGGTTGTATCTTCAAGGTTCTTGCATCTCATCATTCTTTTGTTCCATCATTGTATCAGTTTTGTGGATTTACACAGAACAGATTCTAGTCTTGCTCCATCAAGAACCAGAGATTTCAAGGATATCTGCAGTGTATATGAAGTTTCTCATCCCAGGATTATTTGCATATGGCTTACTACAGAACATCCTGAGGTTTCTCCAAACACAATCTGTTGTCATGCCTTTGGTTTTCTTCTCTGCCATCCCAATGTTCATCCACATACCTATTGCATATGCAAACAAGTTTGAGAAATCTTGGAAAGGCTTCTCAGTAGAAGCTTTTAGCTACAGTCTTTCAAGCTTAAAACTAGCTATTCCATCAGCAGCAATGGTGTGTTTGGAGTATTGGGCGGTTGAGGTTATGGTTTTCTTAGCCGGGTTGATGCCGAACCCAGAAACAAGTACTTCACTGATAGCAATGTGTGACAACACACAAACCATTGCCTACATGATCACTTGTGGACTCAGTGCTGCAGCAAGCACAAGGGTCTCAAATGAATTGGGAGCAGGCAATTTTGACAAAGCCAAAACTGCCATGTTTGCAACTCTCAAGCTTTCTGTCCTCCTTCCTCTGCTAGTTGTTTTGGCACTTGCATTTGGACATAACACCTGGGCTAGCTTCTTCATCAACAGCATTACAATTATGGATGAGTTTTCTTCCATGGTCCCATTTCTCGCTATCTCGATAACGCTTGACTCTGTTCAAGGCGCCATATCAGGGGTGGCTAGAGGCTATGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACATTCTACTTTGTCGGTGTAACGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATGCTAAGGGTTTATGGATTGGGTACATCTGCGGTCTCTCGTCACAAACTGGTTGTCTTCTTTTGGTTGCTTTATCTGCAAAATGGATTAAAATGAATCAATCTGATTATGAAGTAAAAGGCCAGCCAAGGTTTATCCGTTTTATATCCTCCTCTGCTCTTCGTTCAATCGCTCAAATGGCAATGGCTTCAGTTTTGGCCCTCAATGGAGTGAAATTGGCTACGACTTCTCAAGCTTATGTGGAAAGTAAGGCTGCAATCGACACCAAGGCTCTGTTATCGGAGCTCTCCCATCAATTCTACGGCCTTAGATGGGTCTCCGGCACCGGCGGCAGCATTGCGATCAAGGTTCATTACCATTCCATTCCCAAGAGACAAAAGCTAACCGCTATGTCGCCTTCTGGTGTTAAGGAGAGAATGGTACGTGAGGACACCTGCATGTTATCTTATGGTGGGTTGATCTTATATTCACCACTTCCAAAACCATTTTCCCACAAACTCCCAAACTGTTTTGACAGTGGACGTCTTTTTATGAAGATGCGCAATGCTGGAGCTGCTATGGAATCGTATCTTGTAACACAAAGGAACCATCATCAGCGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTCCTCTTTCCATATGCTCGGGATAATGTTGGAAAGCATTTGATTTTAACTTATGAAACTGCAGAAACTCAAGATGACATTAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAAAGGAGTTGCTGGAGCTGTGCCTATCCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTTCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCTTTGAAACAATTGCAAGGTCACGTATGGAGAACAGGATTTTCAGGCAATGAATTGGAGGGAGTAGTTTTTGATGACGTCCCAGAGGCTCTCGAGAGATGGCATGCTTCGGGCATTAAGGTCTACATATACTCGAGTGGCAGCAGGTTGGCACAAAGGCTTATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTGTCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAACAAGCAGTTATGTTGAGATTTCAGAGTCTGTTGGAGTTGATACACCATCAGAGATATTGTTCATCACAGATGTCTGTCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCAATCTCAATCCGACCAGGAAACGGTCCACTGCCTGATAATCACGGGTTTCAGACAATCACTTCCTTCTCAGAAATCTGA 2370 43.33 MITLVSVMFAGHLGELELAAATLANTLASVTGFSFMTGLSGALETLCGQAFGRKFHGKMGLYLQGSCISSFFCSIIVSVLWIYTEQILVLLHQEPEISRISAVYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLVFFSAIPMFIHIPIAYANKFEKSWKGFSVEAFSYSLSSLKLAIPSAAMVCLEYWAVEVMVFLAGLMPNPETSTSLIAMCDNTQTIAYMITCGLSAAASTRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVLALAFGHNTWASFFINSITIMDEFSSMVPFLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYFVGVTISILLGFKLRLYAKGLWIGYICGLSSQTGCLLLVALSAKWIKMNQSDYEVKGQPRFIRFISSSALRSIAQMAMASVLALNGVKLATTSQAYVESKAAIDTKALLSELSHQFYGLRWVSGTGGSIAIKVHYHSIPKRQKLTAMSPSGVKERMVREDTCMLSYGGLILYSPLPKPFSHKLPNCFDSGRLFMKMRNAGAAMESYLVTQRNHHQRCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLEKGVAGAVPIPPDNAGKEEVIAALVSNVEAMIKADRKITALKQLQGHVWRTGFSGNELEGVVFDDVPEALERWHASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKRETSSYVEISESVGVDTPSEILFITDVCQEAVAAKAAGLQVAISIRPGNGPLPDNHGFQTITSFSEI 789
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10117450 10130360 + ClCG05G009300.2 Cla05g01005 272495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01005 789 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 548 787 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cla05g01005 789 Pfam MatE 2 150 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla05g01005 789 Pfam MatE 178 338 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cla05g01005 789 CDD MATE_eukaryotic 1 380 IPR045069 GO:0042910|GO:1990961
Cla05g01005 789 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 548 788 - -
Cla05g01005 789 SUPERFAMILY HAD-like 548 789 IPR036412 -
Cla05g01005 789 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 413 538 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cla05g01005 789 CDD HAD_EP 549 770 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cla05g01005 789 Gene3D - 658 789 IPR023214 -
Cla05g01005 789 Gene3D - 561 657 - -
Cla05g01005 789 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 544 789 - -
Cla05g01005 789 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 413 538 - -
Cla05g01005 789 SFLD enolase-phosphatase 548 788 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cla05g01005 789 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 544 789 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cla05g01005 789 Gene3D - 435 537 IPR036409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01005 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family K16054 csv:101221712 634.409
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01005 Cla-Chr5:10117450 Cla11g01753 Cla-Chr11:31134803 1.69E-146 dispersed
Cla05g01005 Cla-Chr5:10117450 Cla06g01437 Cla-Chr6:27936273 8.27E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g01005 Cla_Chr05 FPKM 1.209424 1.571431 0.275833 0.780222 0.202814 0.422079 0.324802 0.106818 0.132105 0.094821