Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01006 ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTAAGAAGAGCAGCTCAATCTTCGAGTCTTCTAAGCCCTTTTGCCGTTAACCGCGATAAACTCTCCTTCCACGAGGCCCGGTTTCCCTTTTCTTCCTCTTCTCCTCTGGGGTCCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGTTGGGGCTTGAGTTTATGAATCTAAAATATATTGCTGATACCACACAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCAGCATTGAGCATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGTACGGGCATTGCTAGGGAAAAACTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTGGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTACGCAAGGTTGGCAATGTTACGGTTTCTTGTACAAGGATTCCATTGACAGCTCTTGAATATGAACCACCGAAGATTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGGATTCAAGATTTCACGATCTAAACTAGTGGATTTAATCAGTAGTGGCGATGTTCGTGTCAATTGGACGCAAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCGTTTCTGTTAGTGGAAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATATGCTGTTGAGCTTATCAGAGATAAAGGAATATATTGGTTGAGAGAAGTTCATACAAAAGGGGAGATCAAGATATCTCTTCAACAGCTGAAAGGCAGTGGACCGTTTCCTGGTCGGATTGAGATTGCCACCTGCAGCCCTGAAACATCGTGGATTGCATTTGAAGAAAGCAGTTCGACCATCATTTTTGTGATATTGAGTATTATTAAAACATGGAAAACAAAAAGGGGAGCAATTGCTTACCCCACAGCAGTGTCAAAGAATCCTGACAGAAAATTCAGAAAACAACTCCCAAATAGCCTCTCAACTCCCGTAGCGCACAGGCTGTTTTCCGGTTTAATTAAGACCAGCGCTGCACAATTTCATAAGTTAAAATCAAATGCTTTCCAACATTATCCCGAGCATATGGAAAGAGGACGTCAGTAA 1401 41.97 MAATSIGALWSLRRAAQSSSLLSPFAVNRDKLSFHEARFPFSSSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPELGLEFMNLKYIADTTQRCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALEYEPPKIKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTQITKNGTILKTGDIVSVSGKGRLKIGEINSTKKGKYAVELIRDKGIYWLREVHTKGEIKISLQQLKGSGPFPGRIEIATCSPETSWIAFEESSSTIIFVILSIIKTWKTKRGAIAYPTAVSKNPDRKFRKQLPNSLSTPVAHRLFSGLIKTSAAQFHKLKSNAFQHYPEHMERGRQ 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10128284 10135940 - ClCG05G009320.1 Cla05g01006 272496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01006 466 Pfam Putative RNA-binding domain in YlmH 165 240 IPR040591 -
Cla05g01006 466 ProSiteProfiles S4 RNA-binding domain profile. 259 319 - -
Cla05g01006 466 CDD S4 260 314 - -
Cla05g01006 466 TIGRFAM PS_II_S4: photosystem II S4 domain protein 78 332 IPR017506 -
Cla05g01006 466 Gene3D - 160 242 IPR012677 -
Cla05g01006 466 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 51 332 - -
Cla05g01006 466 Gene3D - 253 310 IPR036986 GO:0003723
Cla05g01006 466 Pfam S4 domain 263 305 IPR002942 GO:0003723
Cla05g01006 466 SMART s4_6 259 319 IPR002942 GO:0003723
Cla05g01006 466 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 51 332 - -
Cla05g01006 466 SUPERFAMILY Alpha-L RNA-binding motif 166 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01006 - - - csv:101221944 523.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g212 . . . . Bpe09g00236 . . Bma13g00952 . Cmo04g00586 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1060 . . . . . . Blo10g00761 . Bda12g00838 . . . . . . . Cma04g00552 . Car04g00521 . . Cpe01g00494 . . . . . . . Cla05g01006 Cam05g1095 Cec05g1105 Cco05g1098 Clacu05g1091 Cmu05g1042 Cre05g1115 . . Chy06g01159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010642 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g01006 Cla_Chr05 FPKM 140.072296 153.155106 42.796329 39.590992 34.339722 36.985203 27.79015 22.17543 27.155262 26.764235