Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01008 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGGTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTTTCGTACTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCCGGTCGACTGCCAGGTGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCACATCGCTGCAGGGTGGCCGCCGTGGCTGGCTGCAGTTGCTGGCGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATACAGGGCTCGTGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTAGGATGTCTTGCAGCCTCTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACATCCTGGTGTGAAGTTTACAGAGGCGCAGAAGATTAAGCATTTTAAGACACTACATTTGCATACTCTCAGTTCATTCAATACTTCTGAATCAGAAGTCCAATTTATCTTGGGGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGTGTCTTGAAAATTGCTGACTTTGGTCTTGCAAGTTTTTTTGATATCCATCAAAATCAGCCATTGACTAGTCGGGTTGTTACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGTATACTTGCTGAGTTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTGTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACAATATTTAAGCCCCAACAGCCCTATAGACGTTGTGTTGCAGACACATTTAAAGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACATTACTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTTGCCCTTAAAAGCGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCAAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAAGGACACCGGCTTGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCGCCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAACTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCTATTGATCCACCTAGACCTTCACAAGGAGCAGAAAGAATGGATTCTCAGGTGCGTCATCCGAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGATCCTCCCAAAATCTCAACCGGGGCTGAAACTTTCGCAACTTCAGGACTAGTAGCAGCCAGAAGAAGTATGCTGGCTGAAGATTGTAGGGAAAAGTCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAAAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGGAGCAGCGCCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTATTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGGAAGGTTCAAGCTGATGGGAAACAGATGTCGACGAATTCATTATTCGTTTCTGGTCGTTAA 2211 45.45 MGCVCCKPSAIEDSKESPRERVSSKTSSDLRVARVTSSSREEAFRTKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMGAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQKIKHFKTLHLHTLSSFNTSESEVQFILGQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGLSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDPPKISTGAETFATSGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSAKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10158398 10166591 - ClCG05G009340.1 Cla05g01008 272498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01008 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cla05g01008 736 CDD STKc_CDK9_like 131 444 - -
Cla05g01008 736 PANTHER CYCLIN-DEPENDENT KINASE 1 232 - -
Cla05g01008 736 PANTHER CYCLIN-DEPENDENT KINASE 250 718 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 12 27 - -
Cla05g01008 736 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cla05g01008 736 SMART serkin_6 131 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01008 736 MobiDBLite consensus disorder prediction 473 500 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 713 736 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 633 650 - -
Cla05g01008 736 ProSiteProfiles Protein kinase domain profile. 131 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01008 736 PANTHER CELL DIVISION PROTEIN KINASE 1 232 - -
Cla05g01008 736 PANTHER CELL DIVISION PROTEIN KINASE 250 718 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 473 592 - -
Cla05g01008 736 Gene3D Transferase(Phosphotransferase) domain 1 244 483 - -
Cla05g01008 736 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cla05g01008 736 MobiDBLite consensus disorder prediction 629 664 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 509 525 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 722 736 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 35 49 - -
Cla05g01008 736 MobiDBLite consensus disorder prediction 1 49 - -
Cla05g01008 736 SUPERFAMILY Protein kinase-like (PK-like) 125 452 IPR011009 -
Cla05g01008 736 Pfam Protein kinase domain 131 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01732 Cla-Chr2:32202471 Cla05g01008 Cla-Chr5:10158398 0 dispersed
Cla05g00613 Cla-Chr5:5686445 Cla05g01008 Cla-Chr5:10158398 0 dispersed
Cla05g01008 Cla-Chr5:10158398 Cla11g00055 Cla-Chr11:721799 0 dispersed
Cla05g01008 Cla-Chr5:10158398 Cla03g01582 Cla-Chr3:31590266 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80561 PF00069 Pkinase 1.30E-64 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01008 - - csv:101222182 1390.17