Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01018 ATGGTCTTTGTTTTGATCTTCTTCTCTCTCACTTGCTCTTTCTCACCTTCCTATGGATATGACTCATTGGACCCTTATGCTAACATTACCATCACATGGAATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTGTACAATTTCCAACTGTTTCGCCATGTGGAGTTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGAGGAGGTTATATGGAGTATGTGGGGAGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCTAATTGTTGTAAAGGAGGCGTGCTATCTTCCATGAGACAAGAGTCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTTCTGGAAAGGATGTAGATAACAAAATGCCTGAAAATTTCACACTGGGGCTTCCTGGATATACTTGTAGCGAACCATTTCAAGTCCCTCCGACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGTGTTTACTCCCAATTTCAATCATCACCAACACCAAGGTGCTGCGTTTCATTGTCATCTTTCTACAACAGCACCATTGTCCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAGAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTGTTGCAACTTCCACATGAACATTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCACATGTGCCCAATAAGGGTGCATTGGCACGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAACTTTGCTAAGAATTACTCTGAATGGAACTTAGTAGTGATGCATCCCAATTTGCGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACAGGGATGTTTTGGGGGATTCACTTCTACAATGACTTGTTACTCACATCAGGAGAGAGAGGGAATGTCCAAACAGAAATTCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAATCTCACAGGGCCATGGCAGCCTCATTCATAGTTTTCTTCTTCTTGTTTCTCTCTGTATCATTATAA 1299 43.11 MVFVLIFFSLTCSFSPSYGYDSLDPYANITITWNFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKGEEVIWSMWGAEATQQGNCSKYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQESANYGAAFQMNVGKSSGKDVDNKMPENFTLGLPGYTCSEPFQVPPTKFSKDGGRRWTQVLETWNVTCVYSQFQSSPTPRCCVSLSSFYNSTIVPCPQCSCGCQGLEGTKCVKSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSEWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEILLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKSHRAMAASFIVFFFLFLSVSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10359437 10362852 + ClCG05G009430.2 Cla05g01018 272508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01018 432 Pfam COBRA-like protein 43 205 IPR006918 GO:0010215|GO:0031225
Cla05g01018 432 PIRSF COBRA 1 432 IPR006918 GO:0010215|GO:0031225
Cla05g01018 432 PANTHER COBRA-LIKE PROTEIN 6 7 427 - -
Cla05g01018 432 PANTHER PROTEIN COBRA 7 427 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01018 Cla-Chr5:10359437 Cla06g01531 Cla-Chr6:28866176 4.59E-166 dispersed
Cla05g01018 Cla-Chr5:10359437 Cla07g01518 Cla-Chr7:32368428 2.27E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01018 - - cmo:103496092 854.744