Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla05g01020 | ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGGTACGCAAAATGGAAGAAGCTTCTTGGTTCATGA | 1329 | 46.58 | MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS | 442 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10383588 | 10390425 | - | ClCG05G009450.1 | Cla05g01020 | 272510 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla05g01020 | 442 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 5 | 442 | IPR039204 | - | |
| Cla05g01020 | 442 | Gene3D | - | 59 | 142 | - | - | |
| Cla05g01020 | 442 | Gene3D | Magnesium transport protein CorA, transmembrane region | 145 | 373 | - | - | |
| Cla05g01020 | 442 | CDD | Mrs2_Mfm1p-like | 71 | 439 | IPR039204 | - | |
| Cla05g01020 | 442 | Coils | Coil | 240 | 274 | - | - | |
| Cla05g01020 | 442 | Pfam | CorA-like Mg2+ transporter protein | 252 | 434 | IPR002523 | GO:0016020|GO:0030001|GO:0046873|GO:0055085 | |
| Cla05g01020 | 442 | Gene3D | Magnesium transport protein CorA, transmembrane region | 380 | 440 | - | - | |
| Cla05g01020 | 442 | PANTHER | MAGNESIUM TRANSPORTER MRS2-4-RELATED | 5 | 442 | - | - | |
| Cla05g01020 | 442 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 378 | 429 | IPR045863 | - | |
| Cla05g01020 | 442 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla01g01385 | Cla-Chr1:28189346 | Cla05g01020 | Cla-Chr5:10383588 | 3.75E-20 | dispersed | |
| Cla02g00024 | Cla-Chr2:292387 | Cla05g01020 | Cla-Chr5:10383588 | 0 | dispersed | |
| Cla05g01020 | Cla-Chr5:10383588 | Cla10g01225 | Cla-Chr10:26930061 | 3.83E-51 | dispersed | |
| Cla05g01020 | Cla-Chr5:10383588 | Cla06g00628 | Cla-Chr6:7704903 | 8.89E-101 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla05g01020 | K16075 | - | csv:101203496 | 733.021 |