Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01020 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGACGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCACAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGCTGTTTATTGCTTTTCCTGCTTATTTTTGGGTACGCAAAATGGAAGAAGCTTCTTGGTTCATGA 1329 46.58 MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSTTAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGYAKWKKLLGS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10383588 10390425 - ClCG05G009450.1 Cla05g01020 272510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01020 442 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 442 IPR039204 -
Cla05g01020 442 Gene3D - 59 142 - -
Cla05g01020 442 Gene3D Magnesium transport protein CorA, transmembrane region 145 373 - -
Cla05g01020 442 CDD Mrs2_Mfm1p-like 71 439 IPR039204 -
Cla05g01020 442 Coils Coil 240 274 - -
Cla05g01020 442 Pfam CorA-like Mg2+ transporter protein 252 434 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cla05g01020 442 Gene3D Magnesium transport protein CorA, transmembrane region 380 440 - -
Cla05g01020 442 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 442 - -
Cla05g01020 442 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 378 429 IPR045863 -
Cla05g01020 442 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01020 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 733.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01385 Cla-Chr1:28189346 Cla05g01020 Cla-Chr5:10383588 3.75E-20 dispersed
Cla02g00024 Cla-Chr2:292387 Cla05g01020 Cla-Chr5:10383588 0 dispersed
Cla05g01020 Cla-Chr5:10383588 Cla10g01225 Cla-Chr10:26930061 3.83E-51 dispersed
Cla05g01020 Cla-Chr5:10383588 Cla06g00628 Cla-Chr6:7704903 8.89E-101 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g01225 . 1 458 MRS2 Gene Family AT1G16010 79.3 7.2e-191 663.7
Cla08g01046 . 129 520 MRS2 Gene Family AT1G16010 51.9 5.3e-109 391.7
Cla06g00628 . 1 365 MRS2 Gene Family AT5G64560 81.0 1.4e-158 556.2
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G64560 66.7 2.1e-106 382.9
Cla02g00695 . 14 501 MRS2 Gene Family AT3G19640 64.4 5.3e-155 544.7
Cla05g01020 . 59 442 MRS2 Gene Family AT3G58970 70.3 7.9e-142 500.7
Cla02g00024 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.4e-116 415.2
Cla08g01046 . 146 520 MRS2 Gene Family AT2G03620 68.4 4.4e-137 485.0
Cla10g01225 . 13 458 MRS2 Gene Family AT2G03620 50.9 1.7e-104 376.7
Cla05g01020 . 59 441 MRS2 Gene Family AT4G28580 50.4 1.1e-92 337.4
Cla06g00628 . 1 327 MRS2 Gene Family AT5G09690 76.1 4.1e-127 451.4
Cla07g00057 . 790 1110 MRS2 Gene Family AT5G09690 62.1 2.3e-101 365.9
Cla06g00628 . 23 287 MRS2 Gene Family AT5G09720 68.3 1.8e-89 326.2
Cla07g00057 . 825 1073 MRS2 Gene Family AT5G09720 59.0 9.3e-70 260.8
Cla10g01225 . 1 458 MRS2 Gene Family AT1G80900 78.6 2.2e-187 652.1
Cla08g01046 . 129 520 MRS2 Gene Family AT1G80900 53.4 1.7e-107 386.7
Cla01g01385 . 16 455 MRS2 Gene Family AT5G22830 68.8 2.4e-157 552.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla05g01020 Cla_Chr05 FPKM 1.488856 0.881585 0.43063 0.493607 1.308041 0.984454 1.49254 0.132836 0.078419 0.079316