Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01022 ATGAAGTCGATCAAATCCTCCGGCTTAAACATGGAGCAACCCATTCGTGGATCCTTTGATGAAGGCCAATACAGAAGCCGAAGCATTCACTCCGACGCCGCTAGAATCGATTTGGATAAGAAGGTGAAGAAGGTTCGAGGAAGAGGCAAAACGAAGAACTCGTGGAAACAAGATAGCGAGAAGAGTTTTAAAGAAAAACGCACAATTGAGAGTCTATTTGAGAAGGATTTTGTGGAGAGGCTTCGAAACAGAATCCAAATCCAGACAAGATTTCATTTCGAAGATACTGAAAAGTACTTACCCAGTGATGAATTGGGAACAATTATTCGAAGTGACCAAGCAAGGATGGCGGAGACAATATGGGAAGAAAGCGTAATTCGCCTGGCGCCGCTGTATAGAGCGGCGCTAATGGGCGAATGGGAGATAGCAGAAGCCATTTTCAAGCAAGATTCTAGAGCAATCACGTCGGAGATCAGCCTCTTGAACGAGACTGCTCTCCATGTAGCGGTCGGCACAGGCGGCAATTTGGGATTTGTTGAGAAGCTGGTGAGCTTAATGTGGAAACGATCACTGCCGCTTACACAGGAGGATTTATATGGGAATACTGCGCTTGCTGTTGCCGCCATTGTTGGAAATGTGAAAGCTGCAGAAATCTTGGTCGGGAAAGATGAGATGTTGCCGGCGATGAGAAACCGGGTGAATTACTCGCCGTTGCATCTGGCGGCGAAATATGGGCACAGAGATATGGTTTTGTATCTTCTAGGCGTAACAAAGGACGAAGGGATATTCACCGGTCAATCTGGTGCTAGGCTTCTCAATCTTCTCATTTCATTTGATATCTATGATGTAGCTCTTGATATATTAAATCAACAGCCGAAGTTGGCGGTGGAACAAGATCAATACGGATTCACAGCTCTACAAATGTTGGCTGAAAAACCAGATGTGTTTGAGAGTGGAACAACTCAGCTTGGGCGTTGCCGACGCATCCTTCATCCTCGCTCCCGTGTTGCTGTGGAAGTCTTCGATGCTTCTGATCATCTGCCCATGCAACAAAGTGATATCGAAAGTCCTCCTGAAATCTCAAACAATGCAGCTGCAAGAATGGGGAGTGTTGAAGTTGCCATAGCAATTGTAAGAGTTTATCCTTATTCAATTTGGTTCCGCGATAGCCGTGAATGCAATATTTTTCAGATCGCTGTTCTTCATCGTCAACACAAGATTTATAATCTTATATATCAAATGACTTCACACAAGTATTTTGCAGCAGCTTTTCTTGACAATAATGATAACAACATCTTGCATTTAGCTGGTGAGCTTGTTCCATCTCATTCAATCTCTGGTGCAGCTTTGCAATTGCAACGAGAATTGCAGTGGTTTAAGGAAGTTGAAAGATTAGTGCTACCATCTTACAAAAGCATGACAAACAAAGATAACAAAACACCAAGAATGGTATTTAGTGAAGAACATGAAGAGCTAGTTCAGCAAGGTGAAAAATGGATGAAGAACACTGCTTCATCGTACACCGTTGTTGCGGCGCTCATTGCGACGGTTGCATTTGCAGCAATTTTCACTGTACCTGGTGGCAACGACAATGATCAAGGCATCCCTATTCTCATTAACCACAAATTCTTCATGGTTTTTGTAGCAGCAGATGCATTAGCATTAATCACTTCATCTGCTTCAGTAATAATGTTTTTAGGAATACTCACTTCGCGCTACGCAGAAGACGATTTTCTCAAGGTGTTACCTTCGAGATTGATTATCGGTCTCGTCTCGTTGTTCATCTCTATATTATCCATGGTAGCAGCCTTCAGTGCATCCCTTTGCCTAGTTCTTGTTCATCAACTGAGATGGGTGTGGGCTCCAATGATAGTATTTGCCTTGGTTCCTGTTATCTTATTTGCCATGTTGCAATTTCCACTTTTGGTGCAAATGACATCTTCCACATATGGGCCTAGCATTTTTGGTTTGCAAATTTTTCCTTCACAATCCATTCGATTTTGCTCCGTAAGTCTTTATGCGTGTTTCATCGATTTACGCGTTGTGGTTTTAGATCCGTGTTCTGTGATCGACGTTGAGAGAGAGAATGGCTTCTCGTTTCTGGACCCAGGTATTGCGTTCAGTCTAAACGGTGGTGGCAGTGGTTCTGATTCTGAAGCGGAGGAGAGTGACTATGGTGAAGAGCTTGACGACGTACAGGTTGATCCTGGCTCCCAACCGAACAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGCGAAGATTCTGAGGATAAGAAGCGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTACAGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAAGTCATGCGTGTTACTGAGTCTGAGAAGGTGCCGACTCTTTATATTAAAGCACTTGTGATGCTAGAGGACTTCCTAAATGAAGCCATGGCCAATAAGGAAGCAAAGAAGAAAATGAGTACTAGCAATTCTAAGGCCTTAAATTCAATGAAACAGAAGCTAAAGAAGAACAACAAGCAATATGAAGAGGTAATTGCCAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAGGCTGATGAGCTGGAGGAGGAGGAGGAGGATGACGATGAATCTGAATATGAGGATGATCCTTCTAAAATCATGTCAGATTCAGAGCCAGAGCCAGATGTAGATGAAGAAGAAGATCTAGATGATCCAAGTCAAAACTGGGAGAAGAAGAAGAGCAAAAAAAATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGAGATCACATGGGACACTGTGAACAAGAAATTTAAGGAGGTTGTGGCTGCTCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAACAGCTTACATTCTTAACAAAAGTTGCTAAGACCCCTGCACAAAAGCTTGAGATTTTGTTCAGTGTTGTATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCATATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAGAACATGCTTTCTATAATTGACATTCTTGTGCAGAATTCCAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAATGAAAGCCAGAAGCCAGCAGACTATAAGGGAACAATACGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGACCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGCATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCAAAAGTTGCCCTGAGGCGTGTTGAACTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATAGTGGAGATGCAAGTGAGGAGGCTAAAGTGGTTGAAGAGAGCAGGGGCCCTGCTGCATTTATTGTCACTCCAGAGCTTGTACCTCGTAAACCCACCTTTCCAGAGAGTAGTAGGGCTTTTATGGACATTCTGGTAACCCTTATCTACCAATATGGAGATGAGCGCACTAAAGCACGAGCTATGCTCTGCGATATTTATCACCACGCTCTCTTGGATGAATTTTATATTTCTCGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACATTTGGATATTTCAACGCAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTTTATGTGGCTTTCGGGTTGGCCTGATTAGTGAAGGACATGGCTGTCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTCGCTCAAGGTGTCTCACAAAGCCGATACCATGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTACCCAACATGGCAGGCAATGTTCATGATGCCAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTTGAGGTGAGTGAGAGACAAACGTTTACGGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACTCGGGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGGAATCGTGATGAAGTGCTGGAAATGGTAAAAGGGAAAATCAAGGAGGAGGCTTTGAGGACTTACCTTCTCACATACTCTTCGTCCTACGATTCTCTGAGTTCGGACCAACTCACCCAAATGTTCGACCTTGCAGAGGGTCAAACACACAGGATTGTGAGCAAGATGATGATCAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGCGGGTGTGTCATCTTCCACGATGTTACACACACCCGATTACAAGGCCTGGCATTCCAACTGGCTGATAAGTTGTCAATCCTTGCTGAAAGTAACGAGAGAGCAGTTGAGGCAAGAATAGGAGGATTAGATTTACCAATGAGGCGAAGAGACAACCAAGAATATGCTGCTGGAGGGGCTGTAGGAGGGAGTAGCAGGTGGCCAGATAACATGTCGTATAATCAAGGAAGGCATGGTGGTCCTAGTTCGCGTGCAGGATATAGCAGCGGTGGGCGAGGCCAAGGTGGGGCTGGTGGATATTCTAGAGACCGAATGGGTCAGTCTCGAGGAGGCAATGCAGGATATCAAAGCACTCGTTATCAAGACGCCGCATATGGATCAGGGAGGACTGCTTATCAGTCGGGTTCTGCCCGAGGATCCCAGATGGATGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGTGTTCATGCTTAG 4926 44.19 MKSIKSSGLNMEQPIRGSFDEGQYRSRSIHSDAARIDLDKKVKKVRGRGKTKNSWKQDSEKSFKEKRTIESLFEKDFVERLRNRIQIQTRFHFEDTEKYLPSDELGTIIRSDQARMAETIWEESVIRLAPLYRAALMGEWEIAEAIFKQDSRAITSEISLLNETALHVAVGTGGNLGFVEKLVSLMWKRSLPLTQEDLYGNTALAVAAIVGNVKAAEILVGKDEMLPAMRNRVNYSPLHLAAKYGHRDMVLYLLGVTKDEGIFTGQSGARLLNLLISFDIYDVALDILNQQPKLAVEQDQYGFTALQMLAEKPDVFESGTTQLGRCRRILHPRSRVAVEVFDASDHLPMQQSDIESPPEISNNAAARMGSVEVAIAIVRVYPYSIWFRDSRECNIFQIAVLHRQHKIYNLIYQMTSHKYFAAAFLDNNDNNILHLAGELVPSHSISGAALQLQRELQWFKEVERLVLPSYKSMTNKDNKTPRMVFSEEHEELVQQGEKWMKNTASSYTVVAALIATVAFAAIFTVPGGNDNDQGIPILINHKFFMVFVAADALALITSSASVIMFLGILTSRYAEDDFLKVLPSRLIIGLVSLFISILSMVAAFSASLCLVLVHQLRWVWAPMIVFALVPVILFAMLQFPLLVQMTSSTYGPSIFGLQIFPSQSIRFCSVSLYACFIDLRVVVLDPCSVIDVERENGFSFLDPGIAFSLNGGGSGSDSEAEESDYGEELDDVQVDPGSQPNRSRYLQGNASDSEDSEDKKRTVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPTLYIKALVMLEDFLNEAMANKEAKKKMSTSNSKALNSMKQKLKKNNKQYEEVIAKYRENPEIEEEKADELEEEEEDDDESEYEDDPSKIMSDSEPEPDVDEEEDLDDPSQNWEKKKSKKNKLMDKQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILVQNSNIVVDDMVEPDENESQKPADYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQAYLERVGDYKAASKVALRRVELIYYKPQEVYDAMRKLAELSEDGDSGDASEEAKVVEESRGPAAFIVTPELVPRKPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDQLTQMFDLAEGQTHRIVSKMMINEELHASWDQPSGCVIFHDVTHTRLQGLAFQLADKLSILAESNERAVEARIGGLDLPMRRRDNQEYAAGGAVGGSSRWPDNMSYNQGRHGGPSSRAGYSSGGRGQGGAGGYSRDRMGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSARGSQMDASARMVSLNKGVHA 1641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10412339 10434360 - ClCG05G009470.2 Cla05g01022 272512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01022 1641 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 750 1355 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla05g01022 1641 Pfam Domain of unknown function 497 611 IPR026961 -
Cla05g01022 1641 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 717 1640 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla05g01022 1641 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 706 1570 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cla05g01022 1641 MobiDBLite consensus disorder prediction 1 26 - -
Cla05g01022 1641 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1424 1512 - -
Cla05g01022 1641 ProSiteProfiles Ankyrin repeat profile. 233 254 IPR002110 GO:0005515
Cla05g01022 1641 MobiDBLite consensus disorder prediction 1551 1566 - -
Cla05g01022 1641 ProSiteProfiles PCI domain profile. 1323 1495 IPR000717 -
Cla05g01022 1641 SUPERFAMILY Ankyrin repeat 130 436 IPR036770 -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 1541 1641 - -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 1594 1631 - -
Cla05g01022 1641 SUPERFAMILY Winged helix DNA-binding domain 1419 1494 IPR036390 -
Cla05g01022 1641 Pfam PCI domain 1363 1491 IPR000717 -
Cla05g01022 1641 Coils Coil 849 890 - -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 736 750 - -
Cla05g01022 1641 ProSiteProfiles Ankyrin repeat region circular profile. 233 254 - -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 841 937 - -
Cla05g01022 1641 SMART ANK_2a 161 191 IPR002110 GO:0005515
Cla05g01022 1641 SMART ANK_2a 233 262 IPR002110 GO:0005515
Cla05g01022 1641 SMART ANK_2a 199 228 IPR002110 GO:0005515
Cla05g01022 1641 MobiDBLite consensus disorder prediction 711 770 - -
Cla05g01022 1641 SMART PINT_4 1424 1512 IPR000717 -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 751 770 - -
Cla05g01022 1641 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 717 1640 - -
Cla05g01022 1641 Pfam Ankyrin repeats (3 copies) 166 254 IPR002110 GO:0005515
Cla05g01022 1641 Gene3D - 111 440 IPR036770 -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 860 880 - -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 881 902 - -
Cla05g01022 1641 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00428 Cla-Chr3:4894069 Cla05g01022 Cla-Chr5:10412339 6.12E-13 dispersed
Cla05g01022 Cla-Chr5:10412339 Cla03g00409 Cla-Chr3:4714611 1.89E-61 dispersed
Cla05g01022 Cla-Chr5:10412339 Cla05g01023 Cla-Chr5:10445349 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01022 K03252 - csv:101203990 1643.25