Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01030 ATGGAGATGAATCTCCCCAACTACTGGCCGGCCGAGAAAAATGGCGAAGAGAAGAAGAAGGAAGATCATAAGCAAGGAAACGAAGATGACGACGACAACGATAGCGATAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTTACTGATGACAATAAAGTCCATTCCAATAGATGGATCATCTCCCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTATGGACGCAATTCCCAAGCGCCAATTATTAATTGCAGACAGTATTGTCGATCTTTTCTTCGCCATTGATATCTCCTTCACCTTCTTCGTTGCTTACATTGATCATCACACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTAGCATCAACAATCCCATTTGAGACACTGGCCTATCTGTCCACAGGCAAATATGATCTTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCATTGTGCTGGATGCCTCTACTACTTGTTGGCTGATCGATATCCACATGAAGGGAAGACCTGGATCGCAACCTTATTTCCAAATTTCAAAGAGATTAGCCTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGCGGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATCGAAATGGCTTCAAATTTTGTTAACCGAAATCGCCTGCCTTCGAGGGTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAACAGCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGCGTCTCAAAGGAAACACTTGTGGTGCTGGTAGCAAAGATGAAAGCTGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAACGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGACGTTACAGTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTACTACAAGAAGCTATGCATATCAAACAAGCAGACAGTATGATCATTGTCAAGAACTTCCTTCAGCGACTCGAAGTAGTTGCTCAAGAAAAATCCATCGTTAAATCATCAAATAAACTATTGCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGGTGCCAACGTTGATTGAAGAAAAGGATCAAAGTTTTAATTGGAAACACTCCATTGAATTAGATTTTGCTAGGGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGACTGCCACATTCAATGGAGGAGCTCAAAAAAATTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTTTCATAG 1959 42.06 MEMNLPNYWPAEKNGEEKKKEDHKQGNEDDDDNDSDSDMPSSLSLRELSKVILPPLGVSSFTDDNKVHSNRWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFMDAIPKRQLLIADSIVDLFFAIDISFTFFVAYIDHHTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETLAYLSTGKYDLCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPHEGKTWIATLFPNFKEISLGVRYTSAMYWSITTMTTVGYGDLHAVNTAEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRVKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLQCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMHIKQADSMIIVKNFLQRLEVVAQEKSIVKSSNKLLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKIAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10542084 10549331 - ClCG05G009560.2 Cla05g01030 272520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01030 652 SUPERFAMILY cAMP-binding domain-like 328 521 IPR018490 -
Cla05g01030 652 SMART cnmp_10 401 521 IPR000595 -
Cla05g01030 652 CDD CAP_ED 401 504 IPR000595 -
Cla05g01030 652 Pfam Cyclic nucleotide-binding domain 422 503 IPR000595 -
Cla05g01030 652 ProSiteProfiles KHA domain profile. 580 652 IPR021789 -
Cla05g01030 652 Gene3D Jelly Rolls 337 545 IPR014710 -
Cla05g01030 652 Pfam KHA, dimerisation domain of potassium ion channel 580 651 IPR021789 -
Cla05g01030 652 MobiDBLite consensus disorder prediction 12 27 - -
Cla05g01030 652 MobiDBLite consensus disorder prediction 1 41 - -
Cla05g01030 652 PANTHER POTASSIUM CHANNEL AKT1 572 651 IPR045319 GO:0005249|GO:0006813
Cla05g01030 652 PANTHER POTASSIUM CHANNEL AKT1 47 533 IPR045319 GO:0005249|GO:0006813
Cla05g01030 652 PANTHER POTASSIUM CHANNEL AKT2/3 47 533 - -
Cla05g01030 652 PANTHER POTASSIUM CHANNEL AKT2/3 572 651 - -
Cla05g01030 652 Gene3D - 83 324 - -
Cla05g01030 652 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01030 652 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01030 652 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01030 652 PRINTS EAG/ELK/ERG potassium channel family signature 297 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cla05g01030 652 ProSiteProfiles cAMP/cGMP binding motif profile. 401 520 IPR000595 -
Cla05g01030 652 Pfam Ion transport protein 81 330 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla05g01030 652 SUPERFAMILY Voltage-gated potassium channels 76 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01030 Cla-Chr5:10542084 Cla06g01070 Cla-Chr6:23198647 6.64E-163 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01030 K21867 - csv:101205212 1163.29