Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla05g01034 ATGAAAATGGAGGAAGACGACGAAGAAAGAAAATCCACCTTCCCAGCCACCACTACCACCAAATACAAAACAGAAGCAAAAAAACTAAAAAATGGTGGAAATTTTCTTTCGACAACACCCGGTTTTTTCTTTTCTTCGGATTTTCCTTTGAAACCCATCTCAATTTCAGTATACCCAGTAAAGAATTCGATGCAAAATCAGGAAACGATGAAGATATTCAGTAGTTTCCTTCTTTGTTTACTCTCTGTAGTAACTGTAACTTCAGCAGCCACTCCAATCGCAAACCCCATCTGCCCAATGGACCTCAACTATGTCCTCAGAATCCCTTGGAATGCCACTGATTGTCGGAACCCTTTCTTCCAGGCCACTGCCAAATCCGCCATGAATGATACCTCCAAAATCCCTTGTTGTCAAACCCTTTTGTCCTTGTTTGGAATTGCTTTGGCCCAACACCTTAAAGAGACTTCTCTTTTCAACCTCCCAGACCTCGCAACCTCCAATTCTTGCCTTCGCGATTACCAATCGAAGCTCTCCTCGCTCTCCCTTCCCGGCGACCTTGTTTCCAATTGCTTTAATCCTTTGCAATTTGTGATCTCTGCTAATGTCTGTGCTGGTATTCAAACTACTCGAGATTGGGTTTCGAAACTTGGCCCTAACTCCCCGCTCGATTCTGGGTGTCGGTCGGAACTTGTTGGTCCTGGTTGTGATGCTTGTCTCGCCGCTGGTCTCAAAGTTCAAGCGACTTTGACTCGAATTGATGGTAATAAATCTCATTCTATGGATTGTTTTTACTTTGCTGTTCTTTATGCTGCTGGCATTGTGAATGAGTCTGGCCCTGAGGGCGACAGTGCGTTGGGTTGCATATTTAATTTGCCATTGAGTACTCAAAAGGATTCCAAAAGTAATCATTCTGCTCTAGTTTATGGCCTTACTGCTGCTGCTGTTGGAATTTTGGTTGTTTTTGTTCTTTTGGGAATAGGATTTTGGTTTTACAAATGGAAAAAATTGGCTCAGAAGTCTAGTTTAGAGTTTGATGTGGAGCTGGATGAACAAGGGTCTAGGCCACATGCAAGGCCAAACACTGGATCAATTTGGTTCAAGATTCAGGAGCTTGAGAAGGCAACTAATAACTTTTCTTCAAAAAACTTCATTGGGAGAGGTGGGTTTGGTTTAGTTTACAAAGGGACATTACCTGATGGAAGTATGGTGGCAGTCAAGAAAGTAATTGAATCAGATTTTCAAGGCAATGCCGAGTTTTGCAATGAGGTTGAAATAATCAGTAATCTAAAGCATAGGAATCTTGTTCCGCTTCGTGGTTGTTGCGTGATCGATGGGGATGACGGTCATGATGAGGGAGCAAGTGAGAGATACCTTGTTTACGATTACATGCCAAATGGAAATCTCGATGACTATTTGTTCCCTATACCATTTGATGAAGTTGGAACTGTAAAAAAATCATTGACATGGCCTCAAAGGAAGAATATTATCTTGGACGTGGCAAAGGGCTTAGCCTATCTGCACTATGGAGTGAAACCTGCCATATATCATAGAGATATCAAGGCGACGAATATATTGCTAGATGCAGACATGAGAGCAAGAGTGGCAGATTTCGGGCTCGCCAAACAAAGCAGGGAAGGACAGTCTCATCTAACGACTCGAGTTGCAGGTACTCATGGGTATTTAGCCCCTGAATATGCGCTTTATGGACAACTAACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTCTCTCTGTCGTCATCACCGCGTGCATTCCTGATCACAGATTGGGCTTGGTCCTTGGTGAAAGCTGGAAAAATAGGGGAAACTCTAGACCCTTCACTGCTGAAAGATGGGGATTCTTCTAATTCAAATCCAAAAGCCATAATGGAAAGATTCATTGCGGTTGGAATTTTATGTTCTCATGTGATGGTTGCTTTGAGGCCCACCATTATGGAAGCTCTGAAAATGTTGGAAGGTGACATTGAAGTTCCCCAAATTTCTGATCGGCCAGTGCCTTATGGACATCCTTCATTTGTTGGTGATGGCAGCAACTTCAGTATATCACCGACATTAAGTGGACGCAAAAATGCTCCAAGAGTTTCTCATATAGCAACTCAAATGAAGGCTGCCATTCGGGATTATCCAATGCAGTCGGACGACGTTTTCTGA 2211 42.79 MKMEEDDEERKSTFPATTTTKYKTEAKKLKNGGNFLSTTPGFFFSSDFPLKPISISVYPVKNSMQNQETMKIFSSFLLCLLSVVTVTSAATPIANPICPMDLNYVLRIPWNATDCRNPFFQATAKSAMNDTSKIPCCQTLLSLFGIALAQHLKETSLFNLPDLATSNSCLRDYQSKLSSLSLPGDLVSNCFNPLQFVISANVCAGIQTTRDWVSKLGPNSPLDSGCRSELVGPGCDACLAAGLKVQATLTRIDGNKSHSMDCFYFAVLYAAGIVNESGPEGDSALGCIFNLPLSTQKDSKSNHSALVYGLTAAAVGILVVFVLLGIGFWFYKWKKLAQKSSLEFDVELDEQGSRPHARPNTGSIWFKIQELEKATNNFSSKNFIGRGGFGLVYKGTLPDGSMVAVKKVIESDFQGNAEFCNEVEIISNLKHRNLVPLRGCCVIDGDDGHDEGASERYLVYDYMPNGNLDDYLFPIPFDEVGTVKKSLTWPQRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDFSLSSSPRAFLITDWAWSLVKAGKIGETLDPSLLKDGDSSNSNPKAIMERFIAVGILCSHVMVALRPTIMEALKMLEGDIEVPQISDRPVPYGHPSFVGDGSNFSISPTLSGRKNAPRVSHIATQMKAAIRDYPMQSDDVF 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10617308 10619601 - ClCG05G009600.2 Cla05g01034 272524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla05g01034 736 SMART serkin_6 378 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01034 736 Gene3D Transferase(Phosphotransferase) domain 1 463 681 - -
Cla05g01034 736 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 79 709 - -
Cla05g01034 736 SUPERFAMILY Protein kinase-like (PK-like) 356 672 IPR011009 -
Cla05g01034 736 ProSitePatterns Protein kinases ATP-binding region signature. 384 407 IPR017441 GO:0005524
Cla05g01034 736 Pfam SPARK 95 263 IPR043891 -
Cla05g01034 736 Gene3D Phosphorylase Kinase; domain 1 343 462 - -
Cla05g01034 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Cla05g01034 736 Pfam Protein kinase domain 380 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla05g01034 736 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 79 709 - -
Cla05g01034 736 ProSiteProfiles Protein kinase domain profile. 378 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01034 Cla-Chr5:10617308 Cla09g00620 Cla-Chr9:5800438 5.62E-112 dispersed
Cla05g01034 Cla-Chr5:10617308 Cla10g01334 Cla-Chr10:28305246 4.30E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80562 PF00069 Pkinase 1.00E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla05g01034 - - bhj:120088261 1259.59